Add CelloType tool

components/tool/CelloType.tsx

@@ -0,0 +1,30 @@
+import React from 'react';
+
+const CelloType: React.FunctionComponent = () => {
+    return (
+        <div>
+            <h3>CelloType</h3>
+            <p>
+                <a href="https://github.com/tanlabcode/CelloType">CelloType</a>{' '}
+                is an end-to-end Transformer-based method for automated
+                cell/nucleus segmentation and cell type classification. This
+                implementation is published at:{' '}
+                <a href="https://www.biorxiv.org/content/10.1101/2024.09.15.613139v1.full">
+                    https://www.biorxiv.org/content/10.1101/2024.09.15.613139v1.full
+                </a>
+            </p>
+            <p>
+                <a href="https://github.com/tanlabcode/CelloType">
+                    <img
+                        loading="lazy"
+                        src="https://github.com/tanlabcode/CelloType/blob/main/figures/codex_example.png?raw=true"
+                        alt=""
+                        width="800"
+                    />
+                </a>
+            </p>
+        </div>
+    );
+};
+
+export default CelloType;

components/tool/toolDetails.tsx

@@ -2,6 +2,7 @@ import CBioPortal from './cBioPortal';
 import Minerva from './Minerva';
 import Mcmicro from './Mcmicro';
 import GoogleBigQuery from './GoogleBigQuery';
+import CelloType from './CelloType';
 import CellxGene from './CellxGene';
 import CytoCommunity from './CytoCommunity';
 import UCSCXena from './UCSCXena';
@@ -14,4 +15,5 @@ export const ToolDetails: { [toolID: string]: JSX.Element } = {
     HTAX_T1: <CellxGene />,
     HTAX_T2: <UCSCXena />,
     HTA4_T0: <CytoCommunity />,
+    HTA4_T1: <CelloType />,
 };

data/tools_custom.json

@@ -1278,5 +1278,25 @@
     "Tool Input Data": "",
     "Tool Output Data": "",
     "Tool Assay": "H&E whole slide images"
+  },
+  {
+    "": "",
+    "Atlas Name": "HTAN CHOP",
+    "Grant ID": "",
+    "Tool ID": "HTA4_T1",
+    "Parent ID": "",
+    "Tool Publication": "https://pubmed.ncbi.nlm.nih.gov/39345491/",
+    "Perspective": "",
+    "Tool Name": "CelloType",
+    "Tool Alias": "",
+    "Tool Type": "Suite",
+    "Tool Language": "Python",
+    "Tool Homepage": "https://github.com/tanlabcode/CelloType",
+    "Tool Description": "CelloType is an end-to-end Transformer-based method for automated cell/nucleus segmentation and cell type classification",
+    "Tool Topic": "analysis, annotation",
+    "Tool Operation": "",
+    "Tool Input Data": "Imaging",
+    "Tool Output Data": "Annotations",
+    "Tool Assay": "Imaging"
   }
 ]