Releases: ncats/RaMP-Client
Releases · ncats/RaMP-Client
v2.5.2
Update the RaMP R package functionality to use SQLite instead of a dedicated database.
Improve table views for pathway analysis.
Fix download from tables.
What's Changed
- Development by @tsheils in #114
- Development by @tsheils in #115
- fix download by @tsheils in #116
- feat: update token name for development branch by @bettyli037 in #118
- Dev test by @johnbraisted in #119
- Ramp server 3 dev by @johnbraisted in #121
- explicit RMariaDB::MariaDB() call in db.R by @johnbraisted in #122
- Ramp server 3 dev by @johnbraisted in #123
- update install.R to include BiocFileCache installation by @johnbraisted in #124
- Create build.yml by @tsheils in #125
- Development by @tsheils in #126
- fixing chemical enrichment, ui layout by @tsheils in #127
- added 4 Rhea reaction endpoints by @johnbraisted in #128
- plumber reaction endpoint parameter patch by @johnbraisted in #130
- minor change to trigger deployment of RaMP-DB for API by @johnbraisted in #131
- Development by @tsheils in #132
- Development by @tsheils in #133
- updating swagger file and api by @tsheils in #134
- Development by @tsheils in #135
- Development by @tsheils in #136
- fix enrichment download, lint and tests by @tsheils in #137
- fix pathway analysis download by @tsheils in #138
- Development by @tsheils in #139
- Development by @tsheils in #140
- update api to build from ramp main by @tsheils in #141
- fix common reaction query by @tsheils in #142
- updating plumber by @tsheils in #143
- adjust models to split by commas instead of semicolon by @tsheils in #144
- Update runRamp.R by @tsheils in #146
- Updated documentation in plumber.R and extensions.yml by @andyptt21 in #148
- pre-fetch the sqlite database for the Docker container by @KeithKelleher in #149
- Development by @tsheils in #150
New Contributors
- @KeithKelleher made their first contribution in #149
Full Changelog: v2.2.2...v2.5.2
v2.2.2
What's Changed
- feat: update Dockerfile by @bettyli037 in #107
- feat: remove post stage from all Jenkinsfile by @bettyli037 in #110
- Development by @tsheils in #112
- Merge Development by @tsheils in #113
Full Changelog: v2.2.1...v2.2.2
v2.2.1
What's Changed
- fix: added jenkins & docker by @kannabhargav in #1
- Join client server by @kannabhargav in #2
- Join client server by @jorgeso in #3
- Misc updates by @jorgeso in #4
- Development by @jorgeso in #5
- added script to generate intersects for upset plot by @jorgeso in #6
- Development by @jorgeso in #7
- feat: added post deployment step to warmup cache by @mapleknight in #8
- Development by @jorgeso in #12
- Development by @jorgeso in #13
- Development by @jorgeso in #14
- updated columns for fisher test results by @jorgeso in #15
- Development by @jorgeso in #16
- miscelaneous performance changes by @jorgeso in #17
- updated about page by @jorgeso in #18
- Misc updates by @jorgeso in #19
- organized code by @jorgeso in #20
- Development by @jorgeso in #21
- fnished the most of the chemical analysis by @jorgeso in #22
- Development by @jorgeso in #23
- Angular update by @tsheils in #25
- update about page by @tsheils in #26
- Update install.R by @tsheils in #27
- make upset plots responsive by @tsheils in #28
- minor about updates by @tsheils in #29
- fix typo by @tsheils in #30
- Angular update by @tsheils in #31
- Revert "Angular update" by @tsheils in #32
- Angular update by @tsheils in #33
- move db connection to plumber by @tsheils in #34
- Convert project to monorepo, and other updates by @tsheils in #35
- Development by @tsheils in #36
- feat: add support for multiple env build by @mapleknight in #37
- feat: install NCATS required packages to docker image by @mapleknight in #38
- Development by @tsheils in #39
- ui updates, and filter improvements by @tsheils in #40
- split up query page by @tsheils in #41
- fix install.r file by @tsheils in #42
- Updated rFunctions.json to match documentation and vignette from RaMP-DB by @Mathelab in #43
- Add tabs to analysis pages by @tsheils in #44
- update nx, minor ui changes, finish chemical enrichment by @tsheils in #45
- Development by @tsheils in #46
- finish pipeline for pathway enrichment by @tsheils in #47
- add footer, finish enrichment, add analytics by @tsheils in #48
- fix pathway analysis issues, pagination, and add prerendering by @tsheils in #49
- add api link by @tsheils in #50
- add meta tags by @tsheils in #51
- update home page by @tsheils in #52
- fix home page, add filtering and download to chemical analysis and do… by @tsheils in #53
- update plumber and menu options by @tsheils in #54
- Development by @tsheils in #55
- fix chemical class download by @tsheils in #56
- Merge development branch to master for v1.0 by @tsheils in #57
- Speed up file download and support background ids file by @tsheils in #58
- pathway analysis updates by @tsheils in #59
- update analysis to use background or biospecimen parameters by @tsheils in #60
- fix chemical class when no data returned by @tsheils in #61
- fix typo by @tsheils in #62
- Andy plumber changes by @andyptt21 in #63
- update about page and hide file upload for chemical classes by @tsheils in #64
- minor UI updates by @tsheils in #65
- about page fix by @tsheils in #66
- merge dev into master by @tsheils in #67
- fix figshare link by @tsheils in #68
- Add internal swagger API documentation by @tsheils in #69
- sync development and master by @tsheils in #70
- Development by @tsheils in #71
- Development - figshare dynamic url and angular 14 update by @tsheils in #72
- update config variables by @tsheils in #73
- update swagger doc by @tsheils in #74
- fix: added required packages by @mapleknight in #75
- Development by @tsheils in #76
- change swagger url and db config params by @tsheils in #77
- change another figshare url by @tsheils in #78
- update readme by @tsheils in #79
- update pathway enrichment tabs by @tsheils in #80
- make changes based on manuscript feedback by @tsheils in #81
- fix swagger url by @tsheils in #82
- updates for publication, update version info by @tsheils in #86
- merge Development by @tsheils in #87
- library updates by @tsheils in #88
- Development by @tsheils in #89
- Merge pull request #89 from tsheils/development by @tsheils in #90
- fix: add back runtime layer for UI image by @wangk8 in #91
- Development by @tsheils in #92
- Development by @tsheils in #93
- Development by @tsheils in #94
- Development by @tsheils in #96
- update budgets by @tsheils in #98
- Update example by @johnbraisted in #99
- feat: add Jenkinsfile for rampdb-ui and rampdb-api by @bettyli037 in #101
- feat: update 4 Jenkinsfile for RaMP DB API and UI by @bettyli037 in #103
- feat: add o+r permission to assets/* by @bettyli037 in #105
- v2.2.1 production release by @tsheils in #106
New Contributors
- @kannabhargav made their first contribution in #1
- @mapleknight made their first contribution in #8
- @Mathelab made their first contribution in #43
- @andyptt21 made their first contribution in #63
- @wangk8 made their first contribution in #91
- @johnbraisted made their first contribution in #99
- @bettyli037 made their first contribution in #101
Full Changelog: https://github.com/ncats/RaMP-Client/commits/v2.2.1