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Template/update#133

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anoronh4 wants to merge 34 commits intodevmskcc/forte:devfrom template/updatemskcc/forte:template/updateCopy head branch name to clipboard

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Commits

Commits on Sep 25, 2024

• update .nf-core.yml

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  6ab83fb

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• Template update for nf-core/tools version 2.14.1

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Commits on Jan 8, 2025

• Merge branch 'TEMPLATE' into template/update

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• Merge branch 'develop' into template/update

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• fix .nf-core.yml linting error

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• fix pipeline schema draft

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• fix linting errors

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• fix linting errors with prettier

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• fix uninitialized ch_versions channel

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• fix reference to module file

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• fix call to getGenomeAttribute method

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• Template update for nf-core/tools version 3.1.1

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• Merge branch 'TEMPLATE' into template/update

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• fix prettier linting issue

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• removed redundant parameter in nextflow schema

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Commits on Jan 9, 2025

• fix tests

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• update MULTIQC process calls

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• fix bugs in meta, replacing 'sample', 'fq_num', 'fastq_pair_id', etc in meta map

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• empty

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• update CHANGELOG.md for current PR

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• add back software yaml file check in the pytest with different file name

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Commits on Jan 10, 2025

• update input schema

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• add schema input and validation for maf input sheet

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• update fillout test workflow

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• disable nf-core tools lint in github actions workflows

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• empty

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• fix linting errors in input schema

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• fixed fillout test with added nf-schema validation

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Commits on Jan 27, 2025

• change branch name develop to dev

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• Merge branch 'dev' into template/update

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• fix indentations

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Commits on Feb 3, 2025

• Merge branch 'develop' into template/update

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Commits on Feb 4, 2025

• bugfix uncollected multiqc files for batch qc

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• bugfix

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