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  • LLaVA_cellwhisperer_develop Public

    Python Apache License 2.0 Updated Mar 4, 2025

  • dotfiles Public

    My dotfiles

    Emacs Lisp Updated Feb 22, 2025

  • snakemake Public

    Forked from snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML MIT License Updated Feb 19, 2025

  • homepage Public

    Forked from jarrekk/Jalpc

    My Jekyll based homepage - Theme: Minimal mistakes

    JavaScript MIT License Updated Feb 1, 2025

  • nixos-config Public

    Forked from rasendubi/dotfiles

    My dotfiles

    Nix 6 Updated Dec 11, 2024

  • paper-qa Public

    Forked from Future-House/paper-qa

    High accuracy RAG for answering questions from scientific documents with citations

    Python Apache License 2.0 Updated Nov 30, 2024

  • single-cell-transformer-papers Public

    Forked from theislab/single-cell-transformer-papers
    Other Updated Oct 18, 2024

  • dachboden Public

    lights and stuff

    Python 5 3 Updated Sep 4, 2024

  • cv Public

    Forked from ashee/cv

    CV, typesetted in TeX Gyro, using XeTeX, TikZ and Biblatex

    TeX Updated Aug 6, 2024

  • cellxgene Public

    Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript MIT License Updated Jul 18, 2024

  • scGPT Public

    Forked from bowang-lab/scGPT
    Jupyter Notebook MIT License Updated Dec 12, 2023

  • nixpkgs Public

    Forked from rasendubi/nixpkgs

    Nix Packages collection

    Nix MIT License Updated Dec 9, 2023

  • exwm Public

    Forked from ch11ng/exwm

    Emacs X Window Manager

    Emacs Lisp GNU General Public License v3.0 Updated Dec 7, 2023

  • gptel Public

    Forked from karthink/gptel

    A simple LLM client for Emacs

    Emacs Lisp GNU General Public License v3.0 Updated Dec 7, 2023

  • monix Public

    My home automation Pi

    Nix Updated Oct 17, 2023

  • muwhpc_slurm Public

    Cluster config for MUWHPC cluster. Derived from https://github.com/Snakemake-Profiles/slurm

    Python MIT License Updated Jul 13, 2023

  • openfold Public

    Forked from aqlaboratory/openfold

    Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

    Python Apache License 2.0 Updated Jun 8, 2023

  • org-ai Public

    Forked from rksm/org-ai

    Emacs as your personal AI assistant using ChatGPT, DALL-E, Whisper

    Emacs Lisp GNU General Public License v3.0 Updated Apr 29, 2023

  • esm Public

    Forked from facebookresearch/esm

    Evolutionary Scale Modeling (esm): Pretrained language models for proteins

    Python MIT License Updated Mar 10, 2023

  • pavooc Public

    CRISPR design machinery

    Python 1 MIT License Updated Jan 4, 2023

  • cemm.slurm.sm Public

    Forked from epigen/cemm.slurm.sm

    CeMM's Snakemake SLURM cluster profile

    Python GNU General Public License v3.0 Updated Nov 8, 2022

  • helm-bibtex Public

    Forked from tmalsburg/helm-bibtex

    Search and manage bibliographies in Emacs

    Emacs Lisp GNU General Public License v2.0 Updated Nov 1, 2022

  • nature_filter Public

    A simple script for filtering the nature RSS feed for scientific articles

    Python MIT License Updated Oct 19, 2022

  • project-proposal-template Public

    Forked from OpenBioML/project-proposal-template

    The project proposal template for OpenBioML community projects.

    Updated Sep 2, 2022

  • covid19-screens Public

    Analysis of SARS-CoV2 CRISPR screens

    Python Updated Aug 12, 2022

  • srna-seq Public

    Python 1 Updated May 31, 2022

  • mesc-regulation_pub Public

    Python 1 Updated May 25, 2022

  • kickercam Public

    Foosball (Kicker, Tablesoccer) live camera with goal detection and slow-motion replay

    Jupyter Notebook 11 1 GNU General Public License v3.0 Updated Mar 17, 2022

  • bigWigLiftOver Public

    Forked from milospjanic/bigWigLiftOver

    bigWigLiftOver will convert genomics coordinates of a bigwig file mapped to hg18 genome to the hg19 genome, via converting bigwig to bedgraph, and performing liftover, followed by conversion back o…

    Shell Updated Mar 12, 2022

  • temp-files Public

    Updated Mar 11, 2022