Fix all reportAttributeAccessIssue (#336)

pyproject.toml

@@ -110,7 +110,6 @@ reportUnsupportedDunderAll = "error"
 
 # Error reports to fix in code
 reportAssertTypeFailure = "none" # TODO
-reportAttributeAccessIssue = "none" # TODO
 reportGeneralTypeIssues = "none" # TODO
 
 [tool.mypy]

stubs/matplotlib/_mathtext.pyi

@@ -4,9 +4,8 @@ from sre_parse import State
 from tkinter.tix import HList
 from typing import Literal
 
-from matplotlib.mathtext import MathtextBackend
-
 from .font_manager import FontProperties
+from .mathtext import MathtextBackend
 
 def get_unicode_index(symbol: str, math: bool = True) -> int: ...
 

stubs/matplotlib/axes/_axes.pyi

@@ -9,15 +9,6 @@ from matplotlib.artist import Artist
 from matplotlib.axes._secondary_axes import SecondaryAxis
 from matplotlib.axis import XAxis, YAxis
 from matplotlib.backend_tools import Cursors
-from matplotlib.collections import (
-    BrokenBarHCollection,
-    Collection,
-    EventCollection,
-    LineCollection,
-    PathCollection,
-    PolyCollection,
-    QuadMesh,
-)
 from matplotlib.colors import Colormap, Normalize
 from matplotlib.container import BarContainer, ErrorbarContainer, StemContainer
 from matplotlib.contour import QuadContourSet
@@ -34,6 +25,15 @@ from matplotlib.text import Annotation, Text
 from matplotlib.ticker import Formatter
 from matplotlib.transforms import Bbox, BboxTransformTo, Transform
 
+from ..collections import (
+    BrokenBarHCollection,
+    Collection,
+    EventCollection,
+    LineCollection,
+    PathCollection,
+    PolyCollection,
+    QuadMesh,
+)
 from ._base import _AxesBase
 
 class Axes(_AxesBase):

stubs/matplotlib/backends/_backend_tk.pyi

@@ -1,7 +1,6 @@
 import tkinter as tk
 from typing import Literal, Sequence
 
-from matplotlib import backend_tools
 from matplotlib._api import classproperty
 from matplotlib._typing import *
 from matplotlib.backend_bases import (
@@ -13,6 +12,8 @@ from matplotlib.backend_bases import (
     _Backend,
 )
 
+from .. import backend_tools
+
 backend_version: float = ...
 cursord: dict[backend_tools.Cursors, str] = ...
 
@@ -50,8 +51,8 @@ class FigureCanvasTk(FigureCanvasBase):
 class FigureManagerTk(FigureManagerBase):
     canvas: FigureCanvasBase
     num: int | str
-    toolbar: tk.Toolbar
-    window: tk.Window
+    toolbar: NavigationToolbar2
+    window: tk.Tk
 
     def __init__(self, canvas, num, window) -> None: ...
     @classmethod
@@ -64,7 +65,7 @@ class FigureManagerTk(FigureManagerBase):
     def full_screen_toggle(self) -> None: ...
 
 class NavigationToolbar2Tk(NavigationToolbar2, tk.Frame):
-    window: tk.Window = ...
+    window: tk.Tk = ...
     def __init__(self, canvas: FigureCanvasBase, window=..., *, pack_toolbar: bool = True) -> None: ...
     def pan(self, *args) -> None: ...
     def zoom(self, *args) -> None: ...

stubs/matplotlib/backends/backend_gtk3.pyi

@@ -2,10 +2,10 @@ from typing import Callable, Type
 
 # PyGObject is not easily installable on Windows, let tests pass as-is
 from gi.repository import Gtk  # pyright: ignore[reportMissingImports]
-from matplotlib import backend_tools
 from matplotlib._api import classproperty
 from matplotlib.backend_bases import FigureCanvasBase, ToolContainerBase
 
+from .. import backend_tools
 from ._backend_gtk import TimerGTK as TimerGTK3, _BackendGTK, _FigureManagerGTK, _NavigationToolbar2GTK
 
 class __getattr__:

stubs/matplotlib/backends/backend_qt.pyi

@@ -1,6 +1,5 @@
 from typing import Any, Type
 
-from matplotlib import backend_tools
 from matplotlib._api import classproperty
 from matplotlib.backend_bases import (
     FigureCanvasBase,
@@ -11,15 +10,15 @@ from matplotlib.backend_bases import (
     ToolContainerBase,
     _Backend,
 )
-from matplotlib.backend_tools import Cursors
 from matplotlib.transforms import Bbox
 
+from .. import backend_tools
 from .qt_compat import QtCore, QtWidgets
 
 backend_version = ...
 SPECIAL_KEYS: dict = ...
 
-cursord: dict[Cursors, Any] = ...
+cursord: dict[backend_tools.Cursors, Any] = ...
 
 class __getattr__:
     qApp = ...
@@ -36,7 +35,7 @@ class FigureCanvasQT(QtWidgets.QWidget, FigureCanvasBase):
 
     def __init__(self, figure=...) -> None: ...
     def showEvent(self, event) -> None: ...
-    def set_cursor(self, cursor: Cursors) -> None: ...
+    def set_cursor(self, cursor: backend_tools.Cursors) -> None: ...
     def enterEvent(self, event) -> None: ...
     def leaveEvent(self, event) -> None: ...
     def mouseEventCoords(self, pos) -> tuple[float, float]: ...

stubs/matplotlib/backends/qt_compat.pyi

@@ -1,5 +1,11 @@
+from typing import Any, TypeAlias
+
 QT_API_PYQT6: str = ...
 QT_API_PYSIDE6: str = ...
 QT_API_PYQT5: str = ...
 QT_API_PYSIDE2: str = ...
 QT_API_ENV: str = ...
+
+__version__: str
+QtCore: TypeAlias = Any
+QtWidgets: Any

stubs/matplotlib/widgets.pyi

@@ -15,7 +15,6 @@ from numpy import float64, ndarray
 from numpy.typing import ArrayLike
 from PIL.Image import Image
 
-from . import _api, _docstring, backend_tools, cbook, colors, ticker, transforms
 from ._typing import Color
 from .artist import Artist
 from .lines import Line2D
@@ -374,9 +373,6 @@ class LassoSelector(_SelectorWidget):
         props: Mapping | None = None,
         button: MouseButton | Sequence[MouseButton] | None = None,
     ): ...
-    @_api.deprecated("3.5", alternative="press")
-    def onpress(self, event): ...
-    def onrelease(self, event): ...
 
 class PolygonSelector(_SelectorWidget):
     def __init__(

stubs/sklearn/_build_utils/pre_build_helpers.pyi

@@ -5,7 +5,5 @@ import sys
 import tempfile
 import textwrap
 
-from setuptools.command.build_ext import customize_compiler as customize_compiler, new_compiler as new_compiler
-
 def compile_test_program(code, extra_preargs: list = [], extra_postargs: list = []): ...
 def basic_check_build(): ...

stubs/sklearn/cross_decomposition/_pls.pyi

@@ -3,7 +3,6 @@ from numbers import Integral as Integral, Real as Real
 from typing import ClassVar, Literal, TypeVar
 
 from numpy import ndarray
-from scipy.linalg import pinv as pinv2, pinv2 as pinv2, svd
 
 from .._typing import ArrayLike, Float, Int, MatrixLike
 from ..base import BaseEstimator, ClassNamePrefixFeaturesOutMixin, MultiOutputMixin, RegressorMixin, TransformerMixin

stubs/sklearn/utils/fixes.pyi

@@ -9,7 +9,10 @@ import sklearn
 import threadpoolctl
 from numpy import percentile as percentile
 from scipy.linalg import eigh as _eigh
-from scipy.optimize.linesearch import line_search_wolfe1 as line_search_wolfe1, line_search_wolfe2 as line_search_wolfe2
+from scipy.optimize._linesearch import (  # explicitly re-exported
+    line_search_wolfe1 as line_search_wolfe1,
+    line_search_wolfe2 as line_search_wolfe2,
+)
 from threadpoolctl import _ThreadpoolLimiter
 
 from ..externals._lobpcg import lobpcg as lobpcg

stubs/sklearn/utils/optimize.pyi

@@ -3,7 +3,6 @@ import warnings
 import numpy as np
 
 from ..exceptions import ConvergenceWarning as ConvergenceWarning
-from .fixes import line_search_wolfe1 as line_search_wolfe1, line_search_wolfe2 as line_search_wolfe2
 
 # This is a modified file from scipy.optimize
 # Original authors: Travis Oliphant, Eric Jones

stubs/sklearn/utils/validation.pyi

@@ -15,7 +15,6 @@ from numpy import ndarray
 from numpy.core.numeric import ComplexWarning as ComplexWarning
 from numpy.random.mtrand import RandomState
 from pandas import DataFrame
-from pandas.api.types import is_sparse as is_sparse
 from scipy.sparse import spmatrix
 from scipy.sparse._coo import coo_matrix
 

stubs/sympy-stubs/__init__.pyi

@@ -122,6 +122,7 @@ from sympy.core import (
     seterr,
     symbols,
     sympify,
+    trailing,
     use,
     var,
     vectorize,
@@ -526,7 +527,6 @@ from sympy.ntheory import (
     sqrt_mod,
     sqrt_mod_iter,
     totient,
-    trailing,
 )
 from sympy.parsing import parse_expr
 from sympy.plotting import plot, plot_backends, plot_implicit, plot_parametric, textplot

stubs/sympy-stubs/core/__init__.pyi

@@ -28,6 +28,7 @@ from sympy.core.function import (
     expand_trig,
     nfloat,
 )
+from sympy.core.intfunc import integer_log, integer_nthroot
 from sympy.core.kind import BooleanKind, NumberKind, UndefinedKind
 from sympy.core.mod import Mod
 from sympy.core.mul import Mul, prod
@@ -53,7 +54,7 @@ from sympy.core.numbers import (
     zoo,
 )
 from sympy.core.parameters import evaluate
-from sympy.core.power import Pow, integer_log, integer_nthroot
+from sympy.core.power import Pow
 from sympy.core.relational import (
     Eq,
     Equality,

stubs/sympy-stubs/core/evalf.pyi

@@ -1,4 +1,5 @@
-from typing import Any, Callable, Dict as tDict, List, Optional, Self, Tuple as tTuple, Type, Union as tUnion, overload
+from typing import Any, Callable, Dict as tDict, List, Optional, Tuple as tTuple, Type, Union as tUnion, overload
+from typing_extensions import Self
 
 from sympy.concrete.products import Product
 from sympy.concrete.summations import Sum

stubs/sympy-stubs/matrices/__init__.pyi

@@ -1,4 +1,4 @@
-from sympy.matrices.common import MatrixKind, NonSquareMatrixError, ShapeError
+from sympy.matrices.common import NonSquareMatrixError, ShapeError
 from sympy.matrices.dense import (
     GramSchmidt,
     MutableDenseMatrix,
@@ -63,7 +63,8 @@ from sympy.matrices.expressions import (
     trace,
 )
 from sympy.matrices.immutable import ImmutableDenseMatrix, ImmutableSparseMatrix
-from sympy.matrices.matrices import DeferredVector, MatrixBase
+from sympy.matrices.kind import MatrixKind
+from sympy.matrices.matrixbase import DeferredVector, MatrixBase
 from sympy.matrices.sparse import MutableSparseMatrix
 from sympy.matrices.sparsetools import banded
 from sympy.matrices.utilities import dotprodsimp