add plot method for eigenvalues #160
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Signed-off-by: Daena Rys <[email protected]>
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Commenting wirh phone so little bit hard, but: Eventhough SCE method, in description of x say that the obkect must be TreeSE (not SCE). Some users might not knoe that TreeSE is actually SCE and this might be confusing Structure the function so that. One internal functiona prepares the data and another internal function plots the data (.scree_plotter). Put these show.* parameters as a hidden parameters of .scree_plotter |
Signed-off-by: Daena Rys <[email protected]>
Signed-off-by: Daena Rys <[email protected]>
Signed-off-by: Daena Rys <[email protected]>
Signed-off-by: Daena Rys <[email protected]>
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i have added update to consider actual variance explained( |
Signed-off-by: Daena Rys <[email protected]>
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You could also support MDS (aka PCoA). For other ordinations this is not well defined I think. |
| if (!dimred %in% reducedDimNames(x)) { | ||
| stop("'dimred' must specify a valid reducedDim.", call. = FALSE) |
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We could also support index (that could be supported but not described in the documentation --> simpler when less options)
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I'm not sure I understand this. Do you mean subsetting the vector based on indices for example indices = c(4,5)?
Also RDA is based on eigenvalues-eigenvectors |
Signed-off-by: Daena Rys <[email protected]>
Signed-off-by: Daena Rys <[email protected]>
Signed-off-by: Daena Rys <[email protected]>
issue: #159