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Add plotRDA function to beta diversity chapter #343

Merged
merged 29 commits into from
Sep 27, 2023
Merged

Add plotRDA function to beta diversity chapter #343

merged 29 commits into from
Sep 27, 2023

Commits on Aug 22, 2023

  1. Add link to benchmarking and minor polish

    @RiboRings
    RiboRings committed Aug 22, 2023
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  2. Simplify section on supervised ordination

    @RiboRings
    RiboRings committed Aug 22, 2023
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  3. Add clarifications to DAA with confounding

    @RiboRings
    RiboRings committed Aug 22, 2023
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Commits on Aug 23, 2023

  1. Fix beta diversity bug

    @RiboRings
    RiboRings committed Aug 23, 2023
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  2. Minor change

    @RiboRings
    RiboRings committed Aug 23, 2023
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Commits on Aug 26, 2023

  1. Add exercise on DAA method comparison

    @RiboRings
    RiboRings committed Aug 26, 2023
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  2. Fix conflict

    @RiboRings
    RiboRings committed Aug 26, 2023
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  3. Minor fix

    @RiboRings
    RiboRings committed Aug 26, 2023
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  4. Minor fix

    @RiboRings
    RiboRings committed Aug 26, 2023
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Commits on Sep 11, 2023

  1. Streamline RDA section with new plotRDA function

    @RiboRings
    RiboRings committed Sep 11, 2023
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  2. Solve conflicts

    @RiboRings
    RiboRings committed Sep 11, 2023
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  3. Fix rmd table in beta diversity chapter

    @RiboRings
    RiboRings committed Sep 11, 2023
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  4. Fix miaTime missing error

    @RiboRings
    RiboRings committed Sep 11, 2023
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Commits on Sep 12, 2023

  1. Fix miaTime missing error

    @RiboRings
    RiboRings committed Sep 12, 2023
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  2. Add dendextend to DESCRIPTION

    @RiboRings
    RiboRings committed Sep 12, 2023
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  3. Add other missing deps

    @RiboRings
    RiboRings committed Sep 12, 2023
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  4. Fix dep names

    @RiboRings
    RiboRings committed Sep 12, 2023
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  5. Add multiassay analyses deps

    @RiboRings
    RiboRings committed Sep 12, 2023
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  6. Remove reticulate from deps

    @RiboRings
    RiboRings committed Sep 12, 2023
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  7. Add deps for extra materials

    @RiboRings
    RiboRings committed Sep 12, 2023
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Commits on Sep 14, 2023

  1. Improve PCoA example

    @RiboRings
    RiboRings committed Sep 14, 2023
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  2. Fix deployment

    @RiboRings
    RiboRings committed Sep 14, 2023
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Commits on Sep 23, 2023

  1. Implement pseudocount = TRUE and minor fixes

    @RiboRings
    RiboRings committed Sep 23, 2023
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Commits on Sep 25, 2023

  1. Update 30_differential_abundance (#348)

    @Elina297
    Elina297 authored Sep 25, 2023
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  2. Replace pseudocount 1 with TRUE throughout book

    @RiboRings
    RiboRings committed Sep 25, 2023
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  3. Add table of typical beta div combinations

    @RiboRings
    RiboRings committed Sep 25, 2023
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  4. Merge remote-tracking branch 'origin/next_stage' into next_stage

    @RiboRings
    RiboRings committed Sep 25, 2023
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Commits on Sep 26, 2023

  1. Fix pseudocount bug

    @RiboRings
    RiboRings committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Update beta diversity table

    @RiboRings
    RiboRings committed Sep 27, 2023
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