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Glencoe Software
- https://glencoesoftware.com
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bioformats
bioformats PublicForked from ome/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software…
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openmicroscopy
openmicroscopy PublicForked from ome/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…
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bio-formats-documentation
bio-formats-documentation PublicForked from ome/bio-formats-documentation
Bio-Formats documentation
Java 1
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bioformats-examples
bioformats-examples PublicForked from ome/bio-formats-examples
Example code that demonstrates the Bio-Formats API in Java and C++
Java 1
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ome-common-java
ome-common-java PublicForked from ome/ome-common-java
Java library providing common functionality for all OME Java components
Java 1
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ome-documentation
ome-documentation PublicForked from ome/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
Python 1
571 contributions in the last year
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Activity overview
Contribution activity
March 2025
Created 56 commits in 11 repositories
Created 1 repository
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melissalinkert/ome-model-documentation
Python
This contribution was made on Mar 17
Created a pull request in glencoesoftware/bioformats2raw that received 6 comments
Make sure the same OMEXMLMetadataRoot is used in all reader MetadataStores
Fixes #269, cc @psobolewskiPhD.
When testing with --max_workers
greater than 1 somewhere that Runtime.getRuntime().availableProcessors()
is also gr…
Opened 19 other pull requests in 9 repositories
ome/bioformats
2
open
3
merged
1
closed
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Document time parsing and warn if time in milliseconds is out of range
This contribution was made on Mar 12
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bfopen: fix array allocations
This contribution was made on Mar 12
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ImageJ export plugin: add some checks to prevent file appending
This contribution was made on Mar 7
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Fix a bunch of
Implicit type narrowing
warningsThis contribution was made on Mar 6 -
Force isThisType check for .arf files
This contribution was made on Mar 5
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Don't merge: intentionally add a bad calculation to make sure CodeQL flags it
This contribution was made on Mar 4
ome/bio-formats-documentation
3
merged
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Add release notes for 8.1.1
This contribution was made on Mar 3
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Fix two more broken links
This contribution was made on Mar 3
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Make sure all public data is referenced from format pages
This contribution was made on Mar 3
ome/ome-model-documentation
1
open
1
merged
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Clarify the use of "Plane" elements in artifical example data
This contribution was made on Mar 18
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Clean up linkcheck excludes
This contribution was made on Mar 17
glencoesoftware/bioformats2raw
2
merged
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Replace non-existent
--compression-options
with--compression-properties
This contribution was made on Mar 14 -
Update Bio-Formats to 8.1.1
This contribution was made on Mar 5
ome/ome-common-java
1
open
1
merged
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Add DataTools.readFile signature that accepts an encoding name
This contribution was made on Mar 12
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Fix type of skipped bytes counter
This contribution was made on Mar 5
ome/ome-model
1
open
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Replace mailing lists and QA with forum.image.sc and Zenodo
This contribution was made on Mar 17
glencoesoftware/raw2ometiff
1
merged
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Update to Bio-Formats 8.1.1
This contribution was made on Mar 5
ome/www.openmicroscopy.org
1
merged
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Add release announcement for Bio-Formats 8.1.1
This contribution was made on Mar 3
ome/ome-contributing
1
open
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Add step to update file sizes on download page
This contribution was made on Mar 3
Reviewed 16 pull requests in 8 repositories
ome/bio-formats-documentation
5 pull requests
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Replace non-working bionut link
This contribution was made on Mar 26
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Remove obsolete bump_maven_version.py script
This contribution was made on Mar 17
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Update MATLAB documentation for colormap return value
This contribution was made on Mar 14
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Delete ionpath, ignore princeton
This contribution was made on Mar 7
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Fake channel wavelength keys
This contribution was made on Mar 5
ome/bioformats
4 pull requests
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Fix a bunch of
Implicit type narrowing
warningsThis contribution was made on Mar 11 -
fix for garbled images with CZIs
This contribution was made on Mar 6
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Don't merge: intentionally add a bad calculation to make sure CodeQL flags it
This contribution was made on Mar 4
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FakeReader: add support for populating channel wavelengths and instrument
This contribution was made on Mar 4
ome/ome-model
2 pull requests
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Replace mailing lists and QA with forum.image.sc and Zenodo
This contribution was made on Mar 18
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Add CodeQL workflow
This contribution was made on Mar 5
glencoesoftware/bioformats2raw
1 pull request
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Replace non-existent
--compression-options
with--compression-properties
This contribution was made on Mar 17
ome/ome-common-java
1 pull request
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Add CodeQL workflow running on push and pull request events
This contribution was made on Mar 5
ome/ome-contributing
1 pull request
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Rewrite Bio-Formats MATLAB testing section
This contribution was made on Mar 5
ome/www.openmicroscopy.org
1 pull request
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Replace 404-ing sonatype link with a working link
This contribution was made on Mar 5
glencoesoftware/raw2ometiff
1 pull request
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Split compression type/quality into separate section, add JPEG info
This contribution was made on Mar 3