COCOLOCUS

COCOLOCUS implements co-expression analysis for biosynthetic gene clusters (BGCs) and supports BGC boundary refinement and functional inference. New additions now allow parallel analyses for multiple taxa, including cross-species co-expression analysis.

Installation

# install.packages("remotes")        # install remotes if required
remotes::install_github("medema-group/COCOLOCUS", build_vignettes = TRUE, dependencies = TRUE)

Getting started

The best place to learn how to use COCOLOCUS is through the vignettes included with package installation. These provide an overview of the analysis workflow using example datasets.

Reporting issues

Please report bugs, feature requests, or other issues via the GitHub Issues page:
https://github.com/medema-group/COCOLOCUS/issues