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Merge pull request #164 from ufbmi/release-2021-04-15
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Preparing new release.
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@dillerm
dillerm authored Apr 15, 2021
2 parents f22a495 + 621e296 commit b978742
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4 changes: 2 additions & 2 deletions omrse-base.json
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Expand Up @@ -2000,11 +2000,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-03-22"
"val": "2021-04-15"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-base.json",
"version": "http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-base.json",
"xrefs": []
},
"nodes": [
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4 changes: 2 additions & 2 deletions omrse-base.obo
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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: omrse/releases/2021-03-22/omrse-base.owl
data-version: omrse/releases/2021-04-15/omrse-base.owl
remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt
ontology: omrse/omrse-base
property_value: http://purl.org/dc/elements/1.1/contributor "Daniel Welch" xsd:string
Expand All @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:stri
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
property_value: owl:versionInfo "2020-10-27" xsd:string
property_value: owl:versionInfo "2021-03-22" xsd:string
property_value: owl:versionInfo "2021-04-15" xsd:string
name: The Ontology of Medically Related Social Entities

[Term]
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4 changes: 2 additions & 2 deletions omrse-base.owl
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Expand Up @@ -10,7 +10,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/omrse-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-base.owl"/>
<dc:contributor>Daniel Welch</dc:contributor>
<dc:creator>Amanda Hicks</dc:creator>
<dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
Expand All @@ -22,7 +22,7 @@
<rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
<rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
<owl:versionInfo>2020-10-27</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-22</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-04-15</owl:versionInfo>
</owl:Ontology>


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71 changes: 47 additions & 24 deletions omrse-full.json
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Expand Up @@ -3145,11 +3145,6 @@
"pred": "http://purl.obolibrary.org/obo/RO_0002229",
"sub": "http://purl.obolibrary.org/obo/OMRSE_00000126"
},
{
"obj": "http://purl.obolibrary.org/obo/OMIABIS_0000060",
"pred": "http://purl.obolibrary.org/obo/OBI_0000299",
"sub": "http://purl.obolibrary.org/obo/OMIABIS_0001035"
},
{
"obj": "http://purl.obolibrary.org/obo/OMIABIS_0000060",
"pred": "is_a",
Expand Down Expand Up @@ -5615,19 +5610,6 @@
}
]
},
{
"definedClassId": "http://purl.obolibrary.org/obo/OMIABIS_0001035",
"genusIds": [
"http://purl.obolibrary.org/obo/OBI_0000011"
],
"restrictions": [
null,
{
"fillerId": "http://purl.obolibrary.org/obo/OMIABIS_0000060",
"propertyId": "http://purl.obolibrary.org/obo/OBI_0000299"
}
]
},
{
"definedClassId": "http://purl.obolibrary.org/obo/OMRSE_00000030",
"genusIds": [
Expand Down Expand Up @@ -5964,11 +5946,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-03-22"
"val": "2021-04-15"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-full.json",
"version": "http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-full.json",
"xrefs": []
},
"nodes": [
Expand Down Expand Up @@ -18682,6 +18664,44 @@
},
"type": "CLASS"
},
{
"id": "http://purl.obolibrary.org/obo/OBIB_0000000",
"lbl": "biobank description in english",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000117",
"val": "Mathias Brochhausen"
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000118",
"val": "biobank description"
}
],
"definition": {
"val": "A textual entity providing information about a biobank and that is written in English.",
"xrefs": []
}
},
"type": "CLASS"
},
{
"id": "http://purl.obolibrary.org/obo/OBIB_0000001",
"lbl": "sample collection identifier",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000117",
"val": "Mathias Brochhausen"
}
],
"definition": {
"val": "A proper name that refers to a sample collection.",
"xrefs": []
}
},
"type": "CLASS"
},
{
"id": "http://purl.obolibrary.org/obo/OBI_0000011",
"lbl": "planned process",
Expand Down Expand Up @@ -19317,7 +19337,7 @@
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000600",
"val": "This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal. "
"val": "This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal."
}
]
},
Expand All @@ -19337,6 +19357,9 @@
"val": "Mathias Brochhausen"
}
],
"comments": [
"A definition of \"tranfers\" object property can be found in d-acts: http:purl.obolibrary.org/iao/d-acts.owl"
],
"definition": {
"val": "a administrates b if c owns b and some rights and obligations grounded in the owning relation regarding b are transferred from c to a.",
"xrefs": []
Expand Down Expand Up @@ -19376,7 +19399,7 @@
}
],
"definition": {
"val": "A data set that contains the outcome of a survey.",
"val": "A data item that contains the outcome of a survey.",
"xrefs": []
}
},
Expand Down Expand Up @@ -27867,11 +27890,11 @@
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition",
"val": "_:genid2147485092"
"val": "_:genid2147485081"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition",
"val": "_:genid2147485093"
"val": "_:genid2147485082"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
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23 changes: 18 additions & 5 deletions omrse-full.obo
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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: omrse/releases/2021-03-22/omrse-full.owl
data-version: omrse/releases/2021-04-15/omrse-full.owl
subsetdef: attribute_slim ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
Expand All @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s
property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
property_value: owl:versionInfo "2020-10-27" xsd:string
property_value: owl:versionInfo "2021-03-22" xsd:string
property_value: owl:versionInfo "2021-04-15" xsd:string
name: The Ontology of Medically Related Social Entities

[Term]
Expand Down Expand Up @@ -3774,6 +3774,19 @@ property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "PERSON:Kevin Clancy" xsd:string
property_value: IAO:0000119 "OBI branch derived" xsd:string

[Term]
id: OBIB:0000000
name: biobank description in english
def: "A textual entity providing information about a biobank and that is written in English." []
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "biobank description" xsd:string

[Term]
id: OBIB:0000001
name: sample collection identifier
def: "A proper name that refers to a sample collection." []
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string

[Term]
id: OGMS:0000097
name: health care encounter
Expand Down Expand Up @@ -3803,7 +3816,7 @@ property_value: IAO:0000232 "creation date: 2011-09-20T09:57:44Z\nedited date: 3
[Term]
id: OMIABIS:0000060
name: survey data
def: "A data set that contains the outcome of a survey." []
def: "A data item that contains the outcome of a survey." []
is_a: IAO:0000027 ! data item
property_value: IAO:0000117 "Alice Nzinga" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
Expand All @@ -3821,7 +3834,6 @@ id: OMIABIS:0001035
name: survey execution
def: "A planned process that realizes the concretization of a survey to generate an output(survey data.)" []
is_a: OBI:0000011 ! planned process
relationship: OBI:0000299 OMIABIS:0000060 ! has_specified_output survey data

[Term]
id: OMRSE:00000000
Expand Down Expand Up @@ -6686,12 +6698,13 @@ property_value: IAO:0000117 "Person: Jie Zheng" xsd:string
id: OMIABIS:0000008
name: owns
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000600 "This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal. " xsd:string
property_value: IAO:0000600 "This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal." xsd:string

[Typedef]
id: OMIABIS:0000009
name: administrates
def: "a administrates b if c owns b and some rights and obligations grounded in the owning relation regarding b are transferred from c to a." []
comment: A definition of "tranfers" object property can be found in d-acts: http:purl.obolibrary.org/iao/d-acts.owl
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
inverse_of: OMRSE:00000068 ! is administered by
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79 changes: 26 additions & 53 deletions omrse-full.owl
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Expand Up @@ -18,7 +18,7 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/omrse-full.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-full.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-full.owl"/>
<dc:contributor>Daniel Welch</dc:contributor>
<dc:creator>Amanda Hicks</dc:creator>
<dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
Expand All @@ -29,7 +29,7 @@
<rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
<rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
<owl:versionInfo>2020-10-27</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-22</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-04-15</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -1088,12 +1088,6 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.



<!-- http://purl.obolibrary.org/obo/BFO_0000059 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000059"/>



<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
Expand Down Expand Up @@ -1710,7 +1704,7 @@ https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_
</owl:Class>
</rdfs:domain>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal. </obo:IAO_0000600>
<obo:IAO_0000600 xml:lang="en">This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal.</obo:IAO_0000600>
<rdfs:label xml:lang="en">owns</rdfs:label>
</owl:ObjectProperty>

Expand All @@ -1733,6 +1727,7 @@ https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_
<obo:IAO_0000115 xml:lang="en">a administrates b if c owns b and some rights and obligations grounded in the owning relation regarding b are transferred from c to a.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:comment xml:lang="en">A definition of &quot;tranfers&quot; object property can be found in d-acts: http:purl.obolibrary.org/iao/d-acts.owl</rdfs:comment>
<rdfs:label xml:lang="en">administrates</rdfs:label>
</owl:ObjectProperty>

Expand Down Expand Up @@ -10980,6 +10975,27 @@ http://www.medterms.com/script/main/art.asp?articlekey=34214 . Some intervention



<!-- http://purl.obolibrary.org/obo/OBIB_0000000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000000">
<obo:IAO_0000115 xml:lang="en">A textual entity providing information about a biobank and that is written in English.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">biobank description</obo:IAO_0000118>
<rdfs:label xml:lang="en">biobank description in english</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBIB_0000001 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000001">
<obo:IAO_0000115 xml:lang="en">A proper name that refers to a sample collection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">sample collection identifier</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0000011 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011">
Expand Down Expand Up @@ -11201,14 +11217,8 @@ edited date: 30 SEPT 2015</obo:IAO_0000232>
<!-- http://purl.obolibrary.org/obo/OMIABIS_0000060 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0000060">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0001035"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">A data set that contains the outcome of a survey.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A data item that contains the outcome of a survey.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alice Nzinga</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">survey data</rdfs:label>
Expand All @@ -11231,44 +11241,7 @@ edited date: 30 SEPT 2015</obo:IAO_0000232>
<!-- http://purl.obolibrary.org/obo/OMIABIS_0001035 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0001035">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0001025"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000060"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0001025"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000060"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that realizes the concretization of a survey to generate an output(survey data.)</obo:IAO_0000115>
<rdfs:label xml:lang="en">survey execution</rdfs:label>
</owl:Class>
Expand Down
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