Merge pull request #158 from ufbmi/release-2021-03-22

Preparing for new release.
mcwdsi · Mar 22, 2021 · ac8d48e · ac8d48e
2 parents ac2ba8f + 25e8e38
commit ac8d48e
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Showing 11 changed files with 23 additions and 21 deletions.
diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml
@@ -6,9 +6,9 @@ name: CI
 on:
   # Triggers the workflow on push or pull request events but only for the main branch
   push:
-    branches: [ main ]
+    branches: [ master ]
   pull_request:
-    branches: [ main ]
+    branches: [ master ]
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
@@ -28,6 +28,6 @@ jobs:
 
       - name: Run ontology QC checks
         env:
-          DEFAULT_BRANCH: main
+          DEFAULT_BRANCH: master
         run: cd src/ontology && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' test IMP=false PAT=false
 
diff --git a/.gitignore b/.gitignore
@@ -43,3 +43,5 @@ src/_patterns
 src/_sparql
 .cogs
 pull-request.md
+omrse/catalog-v001.xml
+omrse/language/catalog-v001.xml
diff --git a/omrse-base.json b/omrse-base.json
@@ -2000,11 +2000,11 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2021-03-05"
+            "val": "2021-03-22"
           }
         ],
         "subsets": [],
-        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-base.json",
+        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-base.json",
         "xrefs": []
       },
       "nodes": [

diff --git a/omrse-base.obo b/omrse-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omrse/releases/2021-03-05/omrse-base.owl
+data-version: omrse/releases/2021-03-22/omrse-base.owl
 remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt
 ontology: omrse/omrse-base
 property_value: http://purl.org/dc/elements/1.1/contributor "Daniel Welch" xsd:string
@@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:stri
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: owl:versionInfo "2020-10-27" xsd:string
-property_value: owl:versionInfo "2021-03-05" xsd:string
+property_value: owl:versionInfo "2021-03-22" xsd:string
 name: The Ontology of Medically Related Social Entities
 
 [Term]

diff --git a/omrse-base.owl b/omrse-base.owl
@@ -10,7 +10,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/omrse-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-base.owl"/>
         <dc:contributor>Daniel Welch</dc:contributor>
         <dc:creator>Amanda Hicks</dc:creator>
         <dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
@@ -22,7 +22,7 @@
         <rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
         <rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
         <owl:versionInfo>2020-10-27</owl:versionInfo>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-05</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-22</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/omrse-full.json b/omrse-full.json
@@ -5964,11 +5964,11 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2021-03-05"
+            "val": "2021-03-22"
           }
         ],
         "subsets": [],
-        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-full.json",
+        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-full.json",
         "xrefs": []
       },
       "nodes": [

diff --git a/omrse-full.obo b/omrse-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omrse/releases/2021-03-05/omrse-full.owl
+data-version: omrse/releases/2021-03-22/omrse-full.owl
 subsetdef: attribute_slim ""
 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
@@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s
 property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: owl:versionInfo "2020-10-27" xsd:string
-property_value: owl:versionInfo "2021-03-05" xsd:string
+property_value: owl:versionInfo "2021-03-22" xsd:string
 name: The Ontology of Medically Related Social Entities
 
 [Term]

diff --git a/omrse-full.owl b/omrse-full.owl
@@ -18,7 +18,7 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/omrse-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-full.owl"/>
         <dc:contributor>Daniel Welch</dc:contributor>
         <dc:creator>Amanda Hicks</dc:creator>
         <dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
@@ -29,7 +29,7 @@
         <rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
         <rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
         <owl:versionInfo>2020-10-27</owl:versionInfo>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-05</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-22</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/omrse.json b/omrse.json
@@ -5964,11 +5964,11 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2021-03-05"
+            "val": "2021-03-22"
           }
         ],
         "subsets": [],
-        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse.json",
+        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse.json",
         "xrefs": []
       },
       "nodes": [

diff --git a/omrse.obo b/omrse.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omrse/releases/2021-03-05/omrse-full.owl
+data-version: omrse/releases/2021-03-22/omrse-full.owl
 subsetdef: attribute_slim ""
 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
@@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s
 property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: owl:versionInfo "2020-10-27" xsd:string
-property_value: owl:versionInfo "2021-03-05" xsd:string
+property_value: owl:versionInfo "2021-03-22" xsd:string
 name: The Ontology of Medically Related Social Entities
 
 [Term]

diff --git a/omrse.owl b/omrse.owl
@@ -18,7 +18,7 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse.owl"/>
         <dc:contributor>Daniel Welch</dc:contributor>
         <dc:creator>Amanda Hicks</dc:creator>
         <dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
@@ -29,7 +29,7 @@
         <rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
         <rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
         <owl:versionInfo>2020-10-27</owl:versionInfo>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-05</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-22</owl:versionInfo>
     </owl:Ontology>