Merge pull request #167 from ufbmi/release-2021-04-21

merging pull requests #166 and #165, fixing OBIB/OGMS imports and ass…
mcwdsi · Apr 21, 2021 · 7b81491 · 7b81491
2 parents 1c7bc0c + 136778a
commit 7b81491
Show file tree

Hide file tree

Showing 9 changed files with 347 additions and 241 deletions.
diff --git a/omrse-base.json b/omrse-base.json
@@ -541,6 +541,11 @@
           "pred": "is_a",
           "sub": "http://purl.obolibrary.org/obo/OMRSE_00000170"
         },
+        {
+          "obj": "http://purl.obolibrary.org/obo/OGMS_0000100",
+          "pred": "http://purl.obolibrary.org/obo/RO_0002223",
+          "sub": "http://purl.obolibrary.org/obo/OMRSE_00000201"
+        },
         {
           "obj": "http://purl.obolibrary.org/obo/OGMS_0000100",
           "pred": "http://purl.obolibrary.org/obo/RO_0002229",
@@ -996,6 +1001,11 @@
           "pred": "http://purl.obolibrary.org/obo/RO_0000053",
           "sub": "http://purl.obolibrary.org/obo/OMRSE_00000107"
         },
+        {
+          "obj": "http://purl.obolibrary.org/obo/OMRSE_00000126",
+          "pred": "http://purl.obolibrary.org/obo/RO_0002083",
+          "sub": "http://purl.obolibrary.org/obo/OMRSE_00000201"
+        },
         {
           "obj": "http://purl.obolibrary.org/obo/OMRSE_00000132",
           "pred": "is_a",
@@ -2000,11 +2010,11 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2021-04-15"
+            "val": "2021-04-21"
           }
         ],
         "subsets": [],
-        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-base.json",
+        "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-04-21/omrse-base.json",
         "xrefs": []
       },
       "nodes": [

diff --git a/omrse-base.obo b/omrse-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omrse/releases/2021-04-15/omrse-base.owl
+data-version: omrse/releases/2021-04-21/omrse-base.owl
 remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt
 ontology: omrse/omrse-base
 property_value: http://purl.org/dc/elements/1.1/contributor "Daniel Welch" xsd:string
@@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:stri
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: owl:versionInfo "2020-10-27" xsd:string
-property_value: owl:versionInfo "2021-04-15" xsd:string
+property_value: owl:versionInfo "2021-04-21" xsd:string
 name: The Ontology of Medically Related Social Entities
 
 [Term]
@@ -1487,6 +1487,8 @@ id: OMRSE:00000201
 name: admission process
 def: "A deontic document act in which a patient is registered with a health care provider for the purpose of receiving care in an inpatient encounter." []
 is_a: IAO:0021001
+relationship: RO:0002083 OMRSE:00000126 ! patient discharge
+relationship: RO:0002223 OGMS:0000100
 property_value: IAO:0000117 "Amanda Hicks" xsd:string
 
 [Term]

diff --git a/omrse-base.owl b/omrse-base.owl
@@ -10,7 +10,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/omrse-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-04-15/omrse-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2021-04-21/omrse-base.owl"/>
         <dc:contributor>Daniel Welch</dc:contributor>
         <dc:creator>Amanda Hicks</dc:creator>
         <dc:creator xml:lang="en">Mathias Brochhausen</dc:creator>
@@ -22,7 +22,7 @@
         <rdfs:comment xml:lang="en">This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government&apos;s &quot;meaningful use&quot; criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt</rdfs:comment>
         <rdfs:label xml:lang="en">The Ontology of Medically Related Social Entities</rdfs:label>
         <owl:versionInfo>2020-10-27</owl:versionInfo>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-04-15</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-04-21</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -4445,19 +4445,19 @@ Somehow involves skilled nursing encounters</obo:IAO_0000115>
     <!-- http://purl.obolibrary.org/obo/OMRSE_00000201 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000201">
-        <owl:equivalentClass>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021001"/>
+        <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002083"/>
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000126"/>
             </owl:Restriction>
-        </owl:equivalentClass>
-        <owl:equivalentClass>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002223"/>
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000100"/>
             </owl:Restriction>
-        </owl:equivalentClass>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021001"/>
+        </rdfs:subClassOf>
         <obo:IAO_0000115 xml:lang="en">A deontic document act in which a patient is registered with a health care provider for the purpose of receiving care in an inpatient encounter.</obo:IAO_0000115>
         <obo:IAO_0000117 xml:lang="en">Amanda Hicks</obo:IAO_0000117>
         <rdfs:label xml:lang="en">admission process</rdfs:label>