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@maxplanck-ie

Max Planck Institute of Immunobiology and Epigenetics

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  1. snakepipes snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 396 87

  2. parkour parkour Public archive

    Moved to: https://github.com/maxplanck-ie/parkour2

    JavaScript 33 15

  3. parkour2 parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    Python 31 7

  4. HiCAssembler HiCAssembler Public

    Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    Python 28 4

  5. rna-seq-qc rna-seq-qc Public

    Rna-seq pipeline, From FASTQ to differential expression analysis...

    Python 20 12

  6. 10X_snakepipe 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    Python 20 4

Repositories

Showing 10 of 36 repositories
  • parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    Python 31 7 1 2 Updated Apr 25, 2025
  • snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 396 87 37 2 Updated Apr 25, 2025
  • Rdeseq2 Public

    Material for the advanced R course

    R 1 0 1 0 Updated Apr 9, 2025
  • nanoporeReads_dataTransfer Public

    A pipeline to transfer the Nanopore reads to end users

    Python 0 MIT 4 34 (1 issue needs help) 0 Updated Apr 8, 2025
  • Rintro Public

    material for R-Course

    R 5 GPL-3.0 3 2 0 Updated Mar 31, 2025
  • ATACofthesnake Public

    Differential accessibility calculation for bulk-ATAC seq.

    Python 2 MIT 1 9 0 Updated Mar 26, 2025
  • dissectBCL Public

    demultiplexing pipeline

    Python 1 2 11 0 Updated Mar 14, 2025
  • customcontamination Public

    a list of custom contaminants.

    0 2 0 0 Updated Mar 11, 2025
  • 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    Python 20 4 1 0 Updated Dec 19, 2024
  • BigRedButton Public

    1. Push button 2. Get results 3. Publish

    Python 0 0 5 1 Updated Dec 10, 2024