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This repository contains code related to Seibel and Birk 2022.

Required R packages: birk cowplot dplyr ggplot2 lubridate marelac measurements metR ncdf4 reshape2 respirometry

Before anything, download the WOA temperature data that were too big to push to GitHub: https://www.ncei.noaa.gov/thredds-ocean/catalog/ncei/woa/temperature/decav/0.25/catalog.html Place in the WOA directory. Also, gunzip WOA/woa18_all_O00_01.nc.gz.

To generate figure 4: Run "make_Fig4.R"

To generate figure 5: Run "make_Fig5.R"

To generate figures S4 and S5: Run "simulations.R"

To generate figure S6: Run "make_suppl_FAS_plots.R"

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
97-98 ENSO event		97-98 ENSO event
CMIP6		CMIP6
FAS_plots		FAS_plots
Map simulations		Map simulations
WOA		WOA
.DS_Store		.DS_Store
Dg_sims_95CI.pdf		Dg_sims_95CI.pdf
Dosidicus_data_final_2.xlsx		Dosidicus_data_final_2.xlsx
Fig S5.pdf		Fig S5.pdf
Make d_roi.R		Make d_roi.R
README.md		README.md
all_species.R		all_species.R
dg min transects.pdf		dg min transects.pdf
fig4.pdf		fig4.pdf
figS6.key		figS6.key
figS6.pdf		figS6.pdf
fig_s4.pdf		fig_s4.pdf
make_Fig4.R		make_Fig4.R
make_Fig5.R		make_Fig5.R
make_suppl_FAS_plots.R		make_suppl_FAS_plots.R
run_transects.R		run_transects.R
simulations.R		simulations.R
simulations.pdf		simulations.pdf
table_S1 ETP only (updated 2021-04-09).xlsx		table_S1 ETP only (updated 2021-04-09).xlsx

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