avoid conflicts with other taxonomy-based tools and keep script names consistent (also create taxonomy-directory during installation if not already existing) #106
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… consistent (also create taxonomy-directory during installation if not already existing)
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updateTaxonomy.shandupdateAccessions.shwould be most useful in the PATH. However their more generic name can be a problem if other taxonomy-based tools are installed and use the same naming scheme.To fix that, the KRONA naming scheme of the perl-scripts (with "kt" prefixes) is applied to these scripts via softlinking during installation:
updateTaxonomy.sh-->ktupdateTaxonomyupdateAccessions.sh-->ktupdateAccessionsBoth scripts are softlinked to the [prefix]/bin folder.
All instances mentioning the use of
updateTaxonomy.shorupdateAccessions.shinKronaTools.pmandinstall.plhave been corrected accordingly.