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Rediscovering
🎯
Rediscovering
21 followers · 2 following

Sponsoring

@matplotlib

Achievements

Achievement: Pair ExtraordinaireAchievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2

Highlights

  • Pro

Organizations

@EnviroSCALE @KoslickiLab

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mahmudhera/README.md
  • 👋 Hi, I’m @mahmudhera
  • 👀 I’m interested in computational biology and bioinformatics, but my expertise is in modeling problems using mathematics, and solving them using algorithms. I come from a computer science background, and love to connect CS knowledge with biological problems and applications.
  • 🌱 I’m currently working in KoslickiLab (https://koslickilab.github.io/Koslicki-lab-PSU/)
  • 📫 How to reach me: [email protected]

Mahmudur's github stats

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  1. KoslickiLab/fmh-funprofiler KoslickiLab/fmh-funprofiler Public

    A functional profiler for metagenomes using FracMinHash

    Python 13 1

  2. KoslickiLab/mutation-rate-ci-calculator KoslickiLab/mutation-rate-ci-calculator Public

    This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.

    Python 7 1

  3. KoslickiLab/YACHT KoslickiLab/YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    C++ 30 8

  4. kRISP-mER kRISP-mER Public

    A tool to generate personalized guide RNAs for CRISPR without using a reference genome

    Python 3

  5. phylogenetic-tree-using-fracminhash phylogenetic-tree-using-fracminhash Public

    This repo can be thought of as a counterpart to Mashtree - which computes a tree based off of Mash distance. Instead, in this repo, we build a tree based off of FracMinHash distance.

    Roff 2 2

  6. frac-kmc frac-kmc Public

    Forked from KoslickiLab/frac-kmc

    Fast FracMinHash sketch generator

    C++