Improvced and cleaned workflows

.github/workflows/build-test-gc.yml

@@ -1,11 +1,13 @@
-# This workflow will install Python dependencies, the package, and run the tests
-# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+# Build the package with graph-cut support and runs the graphcut tests
+# This test is kept separate, as the graphcut functionality is optional and unstable
+# Triggered whenever a PR into the main or a Release* branch is opened
+# Triggered for each new published release
 
 name: Build and test (w graphcut)
 
 on:
-  push:
-    branches: [ "master", "Release*" ]
+  release:
+      types: [published]
   pull_request:
     branches: [ "master", "Release*" ]
 
@@ -16,32 +18,19 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        #python-version: ["3.8", "3.9", "3.10", "3.11"]
-        python-version: ["3.10"]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install system dependencies for graphcut functionality
       run: sudo apt-get install -y libboost-python-dev build-essential
-    - name: Locate libboost
-      run: |
-        cat /etc/ld.so.conf.d/*
-        ls /usr/lib/x86_64-linux-gnu/libboost_*
-        ls /lib/x86_64-linux-gnu/libboost_*
-    - name: Find library
-      run: python -c "import sys; from ctypes.util import find_library; print('boost_python' + str(sys.version_info.major) + str(sys.version_info.minor), find_library('boost_python' + str(sys.version_info.major) + str(sys.version_info.minor)))"
     - name: Install with test dependencies
       run: |
         python -m pip install --upgrade pip
-        python -m pip install -v .[test]
-    - name: Check install
-      run: |
-        python -c "import medpy; print(medpy.__file__)"
-        python -c "import medpy.graphcut; print(medpy.graphcut.__file__)"
-        python -c "import medpy.graphcut; print(medpy.graphcut.maxflow.__file__)"
-    - name: Test with pytest
+        python -m pip install .[test]
+    - name: Test with pytest (graphcut test only)
       run: pytest tests/graphcut_/*

.github/workflows/build-test.yml

@@ -1,27 +1,27 @@
-# This workflow will install Python dependencies, the package, and run the tests
-# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+# Build the package and run all tests except the graph-cut ones
+# Triggered whenever a PR into the main or a Release* branch is opened
+# Triggered for each new published release
 
 name: Build and test (wo graphcut)
 
 on:
-  push:
-    branches: [ "master", "Release*" ]
+  release:
+      types: [published]
   pull_request:
     branches: [ "master", "Release*" ]
 
 jobs:
   build:
-
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
       matrix:
         python-version: ["3.8", "3.9", "3.10", "3.11"]
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install with test dependencies

.github/workflows/pre-commit.yml

@@ -1,24 +1,24 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+# Runs the pre-commit hooks to make sure that all pushes are properly and consistently treated
+# Also triggers for PRs (potentially coming from external) into master and Release* branches
 
 name: Pre-commit hooks
 
-on: [push, pull_request]
+on:
+  push:
+    branches: ['**'] # note: without branches would execute for tags, too
+  pull_request:
+    branches: [ "master", "Release*" ]
 
 jobs:
   main:
     runs-on: ubuntu-latest
-    strategy:
-      fail-fast: false
-      matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
 
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v5
       with:
-        python-version: ${{ matrix.python-version }}
+        python-version: 3.x
     - uses: pre-commit/[email protected]
     - uses: pre-commit-ci/[email protected]
       if: always()