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Eliminate the Variable class#262

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jagerber48 wants to merge 53 commits intolmfit:masterlmfit/uncertainties:masterfrom jagerber48:feature/linear_combo_refactorjagerber48/uncertainties:feature/linear_combo_refactorCopy head branch name to clipboard

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Commits on Aug 9, 2024

• A first pass on linear_combo -> ucombo

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  3a53d8c

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Commits on Aug 10, 2024

• revert test changes

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Commits on Aug 11, 2024

• rework UCombo, delete Variable

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• some test updates

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Commits on Aug 12, 2024

• Pass more tests

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Commits on Nov 5, 2024

• Merge branch 'master' into feature/linear_combo_refactor

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Commits on Nov 16, 2024

• remove large float test

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Commits on Nov 17, 2024

• Clean up UFloat class

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• some formatting changes

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• uncertainty instead of _linear_combo

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• variety of updates and test cleanup

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• copy tests

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• pickling tests

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• no negative std_dev in tests

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• modify test

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• more tests

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Commits on Nov 18, 2024

• handle some edge cases with 0 uncertainty

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Commits on Dec 5, 2024

• fix test_hypot

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Commits on Dec 7, 2024

• compare analytic and numerical derivatives on math functions

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• unumpy

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Commits on Dec 12, 2024

• mainly code to handle inv and pinv array function

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• Merge remote-tracking branch 'lmfit/master' into feature/linear_combo_refactor

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• fix import

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Commits on Dec 13, 2024

• slim down UCombo, especially remove __hash__

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• Add hashes

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• bring back is_expanded

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• do not check std_dev during operations. This kills performance.

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• avoid empty ucombos, or ucombo/uatom weights exactly equal to zero.

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• special case empty uncertainty in the tests. Is this something we want??

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Commits on Dec 17, 2024

• fix broken test that wasn't running

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• ucombo clean up and refactor

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• don't calculate std_dev with kwargs inputs, cleanup f_with_affine_output a little

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• some correlated_values_norm cleanup

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• todo on untested, probably broken functions

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Commits on Dec 18, 2024

• codecov CI

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• revert previous commit (it was made to the wrong branch and had a wrong commit message)

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  0abc0f6

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Commits on Dec 26, 2024

• fixed ucombo hash

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Commits on Dec 28, 2024

• Merge branch 'master' into feature/linear_combo_refactor

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• start updating docs

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• instance check for ABC real seems to be slow. See if removing that improves performance.

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• need to include int

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Commits on Dec 30, 2024

• documentation and doctest

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• fix index

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• cast default dict to dict for ucombo expanded dict. Also don't do eager checks for absence of uncertainty terms.

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• Add back make.bat

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• add doctest sphinx extension in conf.py so doctests can run

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• Merge branch 'feature/add_make.bat' into feature/linear_combo_refactor

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• UAtom repr

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• error_components doctest

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• doctests

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• more documentation

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Commits on Dec 31, 2024

• don't document Variable

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• add tuples instead of nesting for addition. Will this be faster?

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