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Xarray dumpers / loaders#16

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melonora wants to merge 39 commits intolinkml:mainlinkml/linkml-arrays:mainfrom melonora:xarraymelonora/linkml-arrays:xarrayCopy head branch name to clipboard

+2,445-63

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Commits on Jul 3, 2024

• Work with new array schema and LoL generator

  rly

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  6ad73fc

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• Put labeled by as string annotation on array

  rly

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  92ed77b

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Commits on Jul 4, 2024

• Use pydantic 2 in array classes

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Commits on Jul 5, 2024

• Temp workaround for multivalued annotation value

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  f1754fb

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• Use pydantic 2 in classes

  rly

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  3bf80a1

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• Update tests, dumpers, loaders

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  fc77a6d

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• Update tests, style

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Commits on Jul 6, 2024

• Update gitignore

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  4009efe

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• Clean up

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  35e8750

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• Clean up

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  0af7a87

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• Clean up

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  1f6a7f5

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• Clean up

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  188e5aa

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• Clean up

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Commits on Jul 7, 2024

• Update array file format to be dict of sources

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• Update deps, remove cookiecutter cli

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  175c882

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• Remove demo test

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Commits on Jul 27, 2024

• adjust for non ordered keys

  melonora

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  6aa8878

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Commits on Aug 1, 2024

• add xarray loaders

  melonora

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  1bbd018

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• update dependency

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  0d68f95

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• update module imports

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  0858c17

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• add tests

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  d436994

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• add xarray zarr dumper test

  melonora

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• add xarray yaml netcdf dumper

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• add xarray input

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Commits on Aug 5, 2024

• delete outdated .nc

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• delete outdated .zarr

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  3f86415

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• added name to data arrays

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Commits on Aug 6, 2024

• remove outdated data

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  40e2ded

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• move refernce date to coords.attrs

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  175e014

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• move conversion factor to array attributes

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  f5ce0f9

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• add updated data

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  0d213c3

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• add yaml xarray zarr dumper

  melonora

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  4e9f44f

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• don't use datetime

  melonora

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  06f527e

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• added xarray zarr loader

  melonora

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  b26372e

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• added xarray yaml loaders

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Commits on Sep 19, 2024

• Merge branch 'main' into xarray

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• Update dumpers to write relative to yaml, make loader/dumper tests independent

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  c0bdd6c

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• Implement dump and raise error for dumps

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Commits on Jan 9, 2025

• adjust for deprecated data keyword argument

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