lis_gis

Map viewer for and search interface for USDA/GRIN germplasm accessions and traits. See http://legumeinfo.org/germplasm/map for a live demo. server requirements

• Python 2.7.x
• Django
• PostgreSQL and PostGIS

PostgreSQL setup

Create a database and before loading the schema.sql, create the spatial extension (assuming PostGIS is already available in your PostgrSQL install). Creating the schema will fail unless PostGIS extension is created first.

createdb lis_gis
psql lis_gis
-> CREATE EXTENSION postgis;
-> \q
createuser www

Restore from a db dump

pg_restore -O -C -d lis_gis lis_germplasm.dump

Or start from empty database

psql lis_gis < scripts/schema.sql

Python and Djanjo setup

The required python modules are in the requirements.txt

pip install -r requirements.txt

Unit tests using django_nose

./manage.py test

This command will run Nose test, first populating the test db with subset of the legume accessions. All of views.py is covered. Note: Client side javascript code is not yet covered by this test suite. TODO: implement Selenium or something to test the angular-js application itself.