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Merge branch 'master' into aparent_v3
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haimasree authored Jul 4, 2022
2 parents 5fc779c + 77fa3d8 commit 61f1f93
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17 changes: 12 additions & 5 deletions a2z-chromatin/model-template.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -22,11 +22,11 @@ info:
- Plants
dependencies:
conda:
- python =3.9
- cython =0.29
- tensorflow =2.6
- keras =2.6
- pip
- python=3.9
- cython=0.29
- tensorflow=2.6
- keras=2.6
- pip=21.2.4
pip:
- kipoiseq
schema:
Expand All @@ -37,3 +37,10 @@ schema:
shape: (1,)
doc: is accessible or is unmethylated (DNA), depending on model

{% if model == 'a2z-accessibility' %}
test:
expect:
url: https://zenodo.org/record/6724196/files/a2z-chromatin-a2z-accessibility.predictions.h5?download=1
md5: 8aed39b4c9eff8ba0550ff8faff5cf46
{% endif %}

3 changes: 2 additions & 1 deletion shared/envs/models.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -22,4 +22,5 @@ kipoi-py3-keras2-tf2:
- pwm_HOCOMOCO
- Optimus_5Prime
- Xpresso
- scbasset
- scbasset
- a2z-chromatin

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