cannot manually set colorss

karadavis-lab · Apr 25, 2024 · 02a34ab · 02a34ab
1 parent 196be67
commit 02a34ab
Showing 1 changed file with 6 additions and 17 deletions.
diff --git a/scripts/vitessce.ipynb b/scripts/vitessce.ipynb
@@ -25,7 +25,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -49,7 +49,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -58,7 +58,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -84,7 +84,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -106,20 +106,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "'http://vitessce.io/#?theme=light&url=data:,%7B%22version%22%3A+%221.0.15%22%2C+%22name%22%3A+%22Science+Under+the+Stars%22%2C+%22description%22%3A+%22The+Dataset+for+the+event%22%2C+%22datasets%22%3A+%5B%7B%22uid%22%3A+%22A%22%2C+%22name%22%3A+%22Cancer_Patient%22%2C+%22files%22%3A+%5B%7B%22fileType%22%3A+%22anndata.zarr%22%2C+%22url%22%3A+%22http%3A%2F%2Flocalhost%3A8000%2FA%2F0%2F1d14fbfd-9d89-4f2d-98be-251ec9bee197.adata.zarr%22%2C+%22options%22%3A+%7B%22obsEmbedding%22%3A+%5B%7B%22path%22%3A+%22obsm%2FX_umap_2D%22%2C+%22dims%22%3A+%5B0%2C+1%5D%2C+%22embeddingType%22%3A+%22UMAP%22%7D%5D%2C+%22obsSets%22%3A+%5B%7B%22name%22%3A+%22Cell+Type%22%2C+%22path%22%3A+%22obs%2Fcell_type_patient%22%7D%5D%2C+%22obsFeatureMatrix%22%3A+%7B%22path%22%3A+%22X%22%7D%2C+%22featureLabels%22%3A+%7B%22path%22%3A+%22marker%22%7D%7D%2C+%22coordinationValues%22%3A+%7B%22obsType%22%3A+%22cell%22%2C+%22featureType%22%3A+%22gene%22%2C+%22featureValueType%22%3A+%22expression%22%7D%7D%5D%7D%5D%2C+%22coordinationSpace%22%3A+%7B%22dataset%22%3A+%7B%22A%22%3A+%22A%22%7D%2C+%22embeddingType%22%3A+%7B%22A%22%3A+%22UMAP%22%7D%7D%2C+%22layout%22%3A+%5B%7B%22component%22%3A+%22scatterplot%22%2C+%22coordinationScopes%22%3A+%7B%22dataset%22%3A+%22A%22%2C+%22embeddingType%22%3A+%22A%22%7D%2C+%22x%22%3A+0.0%2C+%22y%22%3A+0.0%2C+%22w%22%3A+6.0%2C+%22h%22%3A+6.0%7D%2C+%7B%22component%22%3A+%22obsSets%22%2C+%22coordinationScopes%22%3A+%7B%22dataset%22%3A+%22A%22%7D%2C+%22x%22%3A+6.0%2C+%22y%22%3A+0.0%2C+%22w%22%3A+6.0%2C+%22h%22%3A+3.0%7D%2C+%7B%22component%22%3A+%22featureList%22%2C+%22coordinationScopes%22%3A+%7B%22dataset%22%3A+%22A%22%7D%2C+%22x%22%3A+6.0%2C+%22y%22%3A+3.0%2C+%22w%22%3A+6.0%2C+%22h%22%3A+3.0%7D%2C+%7B%22component%22%3A+%22heatmap%22%2C+%22coordinationScopes%22%3A+%7B%22dataset%22%3A+%22A%22%7D%2C+%22x%22%3A+0.0%2C+%22y%22%3A+6.0%2C+%22w%22%3A+6.0%2C+%22h%22%3A+6.0%7D%2C+%7B%22component%22%3A+%22obsSetSizes%22%2C+%22coordinationScopes%22%3A+%7B%22dataset%22%3A+%22A%22%7D%2C+%22x%22%3A+6.0%2C+%22y%22%3A+6.0%2C+%22w%22%3A+6.0%2C+%22h%22%3A+6.0%7D%5D%2C+%22initStrategy%22%3A+%22auto%22%7D'"
-      ]
-     },
-     "execution_count": 5,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
+   "outputs": [],
    "source": [
     "vc.web_app()"
    ]