Skip to content

VEBA_v2.2.1
Compare
Choose a tag to compare
@jolespin jolespin released this 30 Aug 00:38
· 14 commits to main since this release
v2.2.1
2a504ae
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
  • [2024.8.29] - Added VERSION file created in download_databases.sh
  • [2024.7.11] - Alignment fraction threshold for genome clustering only applied to reference but should also apply to query. Added --af_mode with either relaxed = max([Alignment_fraction_ref, Alignment_fraction_query]) > minimum_af or strict = (Alignment_fraction_ref > minimum_af) & (Alignment_fraction_query > minimum_af) to edgelist_to_clusters.py, global_clustering.py, local_clustering.py, and cluster.py.
  • [2024.7.3] - Added pigz to VEBA-annotate_env which isn't a problem with most conda installations but needed for docker containers.
  • [2024.6.21] - Changed choose_fastest_mirror.py to determine_fastest_mirror.py
  • [2024.6.20] - Added -m/--include_mrna to compile_metaeuk_identifiers.py for Issue #110
Assets 3
Loading