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VEBA_v2.0.0
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@jolespin jolespin released this 10 Mar 20:12
· 116 commits to main since this release
v2.0.0
07496fa
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Learn about vigilant mode.
  • Changed default assembly algorithm to metaflye instead of flye in assembly-long.py
  • Added number_of_genomes, number_of_genome-clusters, number_of_proteins, and number_of_protein-clusters to feature_compression_ratios.tsv.gz from cluster.py
  • Added -A/--from_antismash in biosynthetic.py to use preexisting antiSMASH results. Also changed -i/--input to -i/--from_genomes.
  • Changed antimash_genbanks_to_table.py to biosynthetic_genbanks_to_table.py for future support of DeepBGC and GECCO
  • Added busco_version parameter to merge_busco_json.py with default set to 5.4.x and additional support for 5.6.x.
  • Added CONDA_ENVS_PATH to update_environment_scripts.sh, update_environment_variables.sh, and check_installation.sh
  • Added CONDA_ENVS_PATH to veba to allow for custom environment locations
  • Changed install.sh to support custom CONDA_ENVS_PATH argument bash install.sh path/to/log path/to/envs/
  • Added merge_counts_with_taxonomy.py
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