Image analysis workflows in OME-Zarr, Fractal development, napari plugins
-
BioVisionCenter, University of Zurich
- Zurich, Switzerland
- @joel_luethi
Highlights
- Pro
Pinned Loading
-
fractal-analytics-platform/fractal-tasks-core
fractal-analytics-platform/fractal-tasks-core PublicMain tasks for the Fractal analytics platform
-
fractal-napari-plugins-collection/napari-feature-classifier
fractal-napari-plugins-collection/napari-feature-classifier Public -
fractal-napari-plugins-collection/napari-ome-zarr-navigator
fractal-napari-plugins-collection/napari-ome-zarr-navigator PublicPython 7
-
fractal-napari-plugins-collection/napari-feature-visualization
fractal-napari-plugins-collection/napari-feature-visualization PublicVisualizing feature measurements on label images in napari
Python 7
1,238 contributions in the last year
Day of Week | March Mar | April Apr | May May | June Jun | July Jul | August Aug | September Sep | October Oct | November Nov | December Dec | January Jan | February Feb | March Mar | ||||||||||||||||||||||||||||||||||||||||
Sunday Sun | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Monday Mon | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Tuesday Tue | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Wednesday Wed | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Thursday Thu | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Friday Fri | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Saturday Sat |
Less
No contributions.
Low contributions.
Medium-low contributions.
Medium-high contributions.
High contributions.
More
Activity overview
Contributed to
fractal-analytics-platform/fractal-tasks-core,
fractal-analytics-platform/fractal-faim-ipa,
fractal-analytics-platform/fractal-helper-tasks
and 41 other
repositories
Loading
Contribution activity
March 2025
Created a pull request in leukemia-kispi/operetta-compose that received 4 comments
Handle NA predictions in classifier task
Description of changes
Currently, the classifier task fails to correctly map names when any predictions are NA and fails with an TypeError: list in…
+3
−1
lines changed
•
4
comments
Opened 1 other pull request in 1 repository
fractal-analytics-platform/fractal-tasks-core
1
merged
-
Fix race condition handling in apply registration task
This contribution was made on Mar 7
Created an issue in fractal-analytics-platform/fractal-containers that received 5 comments
Task collection fails in container that works in regular instances
I've wanted to run a few more complex workflows in the Fractal containers. Task collection of multiple packages like scmultiplex & apx fails in the…
5
comments
Opened 7 other issues in 5 repositories
fractal-analytics-platform/fractal-server
3
closed
-
Task updating: Handle new parameters with default values
This contribution was made on Mar 7
-
TMPDIR vs. FRACTAL_PIP_CACHE_DIR
This contribution was made on Mar 7
-
Use
FRACTAL_PIP_CACHE_DIR
consistently for allpip install
commandsThis contribution was made on Mar 7
fractal-analytics-platform/ngio
1
open
-
roi_table abstraction: Shared class/interface for roi_table & masking_roi_table
This contribution was made on Mar 17
fractal-analytics-platform/fractal-healthcheck
1
open
-
Send email upon config issues
This contribution was made on Mar 14
fractal-analytics-platform/fractal-web
1
closed
-
Task version sorting goes wrong for scmultiplex task
This contribution was made on Mar 14
fractal-analytics-platform/fractal-tasks-core
1
closed
-
Handle race conditions in apply_registration_to_image table copying
This contribution was made on Mar 7
5
contributions
in private repositories
Mar 7 – Mar 14