GitHub - jjcolgan/barseq: Codes assoicated with barseq analysis

jjcolgan / barseq Public

Codes assoicated with barseq analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 34 Commits
day1Vday2MaaslinColon		day1Vday2MaaslinColon
full		full
lane1Counts		lane1Counts
adjustedParamsPCA.R		adjustedParamsPCA.R
barcodeInclusion.sbatch		barcodeInclusion.sbatch
barseq.sbatch		barseq.sbatch
barseqTestRun.sbatch		barseqTestRun.sbatch
combineBarseq.sbatch		combineBarseq.sbatch
day14.R		day14.R
day1Analysis.R		day1Analysis.R
day3Analysis.R		day3Analysis.R
day7Analysis.R		day7Analysis.R
designRandomPool.sbatch		designRandomPool.sbatch
designSortedLibrary.sbatch		designSortedLibrary.sbatch
fullBarseqPipeline		fullBarseqPipeline
fullLocusFitnessAnalysis.R		fullLocusFitnessAnalysis.R
genFullGenesTab.R		genFullGenesTab.R
geneClusteringDjAndColonStrongEffects.R		geneClusteringDjAndColonStrongEffects.R
genesClusteringColonNoFilter.R		genesClusteringColonNoFilter.R
genesClusteringDjAndColonNoFilter.R		genesClusteringDjAndColonNoFilter.R
genesClusteringDjNoFilter.R		genesClusteringDjNoFilter.R
pairedEndBarseq.sbatch		pairedEndBarseq.sbatch
resolveBarcodePosition.sbatch		resolveBarcodePosition.sbatch
runMultiCodes.sh		runMultiCodes.sh
strongFitnessEffectsPcaAndHeatmap.R		strongFitnessEffectsPcaAndHeatmap.R
strongFitnessPhenotypes.R		strongFitnessPhenotypes.R