Skip to content

Commit

Permalink
setup() no longer called in newer pytest versions.
Browse files Browse the repository at this point in the history
  • Loading branch information
jfjlaros committed May 29, 2024
1 parent 3027af9 commit fa055ba
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion docs/usage.rst
Original file line number Diff line number Diff line change
Expand Up @@ -138,7 +138,7 @@ those coming from 10X experiments, barcodes sometimes end up at a specific
location in each read. It can also be that the barcode is in the header, but
only part of this barcode is used, this happens when dual indexing is used for
example. To deal with these cases, both the ``guess`` as well as the ``demux``
subcommand can be instructed to look voor the barcode in the read with the
subcommand can be instructed to look for the barcode in the read with the
``-r`` option and a selection can be made by providing a start- and end
coordinate via the ``-s`` and ``-e`` options. For example, if we want to search
for barcodes in the first six nucleotides of a read, we use the following
Expand Down
2 changes: 1 addition & 1 deletion tests/test_demultiplex.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@


class TestCLI(object):
def setup(self):
def setup_method(self):
fake_open = FakeOpen()
self._handles = fake_open.handles
dmp = import_module('demultiplex.demultiplex')
Expand Down

0 comments on commit fa055ba

Please sign in to comment.