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  1. KrakenTools KrakenTools Public

    KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

    Python 323 91

  2. Bracken Bracken Public

    Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

    C++ 296 50

  3. SkewIT SkewIT Public

    GC Skew Test for Bacterial Genomes

    Python 27 2

  4. DerrickWood/kraken2 DerrickWood/kraken2 Public

    The second version of the Kraken taxonomic sequence classification system

    C++ 738 275

  5. fbreitwieser/pavian fbreitwieser/pavian Public

    🌈 Interactive analysis of metagenomics data

    R 402 78

  6. DerrickWood/kraken DerrickWood/kraken Public

    Kraken taxonomic sequence classification system

    C++ 215 103