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Resampling should be configured when constructing batch providers, not in array configs #97

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rhoadesScholar opened this issue Feb 14, 2024 · 5 comments
Open

Resampling should be configured when constructing batch providers, not in array configs #97

rhoadesScholar opened this issue Feb 14, 2024 · 5 comments
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@mzouink @davidackerman @rhoadesScholar

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ResampledArrayConfig should be a deprecated class.

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Same with BinarizeArrayConfig, MergingInstances, etc....

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rhoadesScholar commented Feb 14, 2024 •
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Make CSV for the datasplit contruction with columns:

  1. train/validate/test
  2. raw_path
  3. GT_path
  4. [weight] default = 1
  5. ....

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Given the run constructor is getting info about the task and model, can we generate all necessary array configs from metadata found at zarr paths?

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rhoadesScholar commented Feb 14, 2024 •
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Add "resolution" to TaskConfig --> automatically resample incoming arrays to the correct resolution

@rhoadesScholar rhoadesScholar assigned mzouink and davidackerman and unassigned d-v-b and pattonw Feb 14, 2024
@rhoadesScholar rhoadesScholar moved this from Todo to In Progress in DaCapo Hackathon 2024 Feb 16, 2024
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@rhoadesScholar rhoadesScholar

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@d-v-b @mzouink @pattonw @davidackerman @rhoadesScholar