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1. BEAST-FLOW BEAST-FLOW Public

   Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

   Nextflow 3 2

2. WasteFlow WasteFlow Public

   Forked from BCCDC-PHL/WasteFlow

   Nextflow pipeline for pathogen surveillance in wastewater

   Nextflow

3. covflo covflo Public

   Forked from BCCDC-PHL/covflo

   Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

   Python 1

4. fluflo fluflo Public

   Forked from BCCDC-PHL/fluflo

   Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

   Nextflow

5. SNPerr SNPerr Public

   Determine read depth and variant frequency thresholds to distinguish NGS sequencing errors from true SNPs. Simulates effect of changing per-site read depth and variant frequency on accuracy of gene…

   Python

6. epyflu epyflu Public

   Consolidated upload, download, and record-keeping of Influenza isolates with GISAID EpiFlu.

   Python 1