feat(IPVC-3107): detect transcripts in UTA but not in txinfo#47
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feat(IPVC-3107): detect transcripts in UTA but not in txinfo#47
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nvta1209
commented
Dec 6, 2024
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| # Install dependencies | ||
| COPY pyproject.toml ./ | ||
| RUN pip install -e .[dev] |
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Two pip-installs is the best solution I could come up with to prevent reinstalling dependencies whenever src changed (for a faster development cycle using docker).
nvta1209
commented
Dec 6, 2024
| uta --version | ||
| uta (-C CONF ...) [options] shell | ||
| uta (-C CONF ...) [options] drop-schema | ||
| uta (-C CONF ...) [options] check-transcripts [--prefixes=PREFIXES] TXINFO_FILE UTA_SCHEMA OUTPUT_FILE |
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I found it confusing to define the cli interface in the docstring.
bsgiles73
approved these changes
Dec 9, 2024
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Adds an optional step to the UTA update procedure which finds transcripts in the current UTA database version which are not in the txinfo file. This does not yet address missing translational exceptions.