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[Needs discussion]names: adds logging #357

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@jrcastro2 jrcastro2 commented Jul 11, 2024

@jrcastro2 jrcastro2 force-pushed the add-orcid-public-data-sync branch from 2e8e25b to 3a8f7c1 Compare July 16, 2024 07:38
@jrcastro2 jrcastro2 force-pushed the add-orcid-public-data-sync branch from 2048618 to 56000b8 Compare July 17, 2024 09:27
@slint slint force-pushed the add-orcid-public-data-sync branch from 56000b8 to 2048618 Compare July 17, 2024 09:59
invenio_vocabularies/cli.py Outdated Show resolved Hide resolved
invenio_vocabularies/cli.py Outdated Show resolved Hide resolved
invenio_vocabularies/config.py Outdated Show resolved Hide resolved
invenio_vocabularies/contrib/names/datastreams.py Outdated Show resolved Hide resolved
invenio_vocabularies/contrib/names/datastreams.py Outdated Show resolved Hide resolved
orcids_to_sync.extend(process_file(f))

def fetch_orcid_data(orcid_to_sync, bucket):
suffix = orcid_to_sync[-3:]
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-3?

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I added a comment there explaining it, the ORCiD information is stored in a xml that we can find in a folder which name is the last 3 digits on the orcid. For instance, this ORCiD info "0000-0001-5109-3700" is located in the folder /700/0000-0001-5109-3700.xml

invenio_vocabularies/contrib/names/datastreams.py Outdated Show resolved Hide resolved
invenio_vocabularies/contrib/names/datastreams.py Outdated Show resolved Hide resolved
"OrcidDataSyncReader downloads one file and therefore does not iterate through items"
)

def read(self, item=None, *args, **kwargs):
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After checking, looks like that this is probably still not cleaned, requires a bit more ❤️ :)

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Right, it was still a draft PR missing some love as you said. Now it's ready to review, still some improvements can be done such as adding more logging but this is a working MVP IMHO.

setup.cfg Outdated
@@ -32,6 +32,10 @@ install_requires =
invenio-administration>=2.0.0,<3.0.0
lxml>=4.5.0
PyYAML>=5.4.1
awscli>=1.33.23
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are all these needed?

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Probably awscli could be removed but the rest were needed, however due to dependency issues between boto3, botocore and commonmet-py, I have replaced them with s3fs which seems to work as fine.

@jrcastro2 jrcastro2 marked this pull request as ready for review July 19, 2024 07:06
@jrcastro2 jrcastro2 force-pushed the add-orcid-public-data-sync branch from ce55082 to 9b4f9ca Compare July 19, 2024 07:15
@jrcastro2 jrcastro2 force-pushed the add-orcid-public-data-sync branch from 9b4f9ca to 00535e0 Compare July 19, 2024 13:44
@jrcastro2 jrcastro2 changed the title names: add orcid public data sync [Needs discussion]names: adds logging Jul 22, 2024
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3 participants