neurodsp -> ibldsp

atlaselectrophysiology/alignment_with_easyqc.py

@@ -1,5 +1,5 @@
 from easyqc.gui import viewseis
-from neurodsp import voltage
+from ibldsp import voltage
 import neuropixel
 from viewspikes.data import stream
 from viewspikes.plots import overlay_spikes

atlaselectrophysiology/extract_files.py

@@ -4,7 +4,7 @@
 from tqdm import tqdm
 import spikeglx
 import numpy as np
-from neurodsp import fourier, utils
+from ibldsp import fourier, utils
 from scipy import signal
 import one.alf.io as alfio
 import ibllib.ephys.ephysqc as ephysqc

atlaselectrophysiology/plot_data.py

@@ -4,7 +4,7 @@
 from brainbox.io.spikeglx import Streamer
 from brainbox.population.decode import xcorr
 from brainbox.task import passive
-from neurodsp import voltage
+from ibldsp import voltage
 import neuropixel
 import scipy
 from PyQt5 import QtGui

dlc/DLC_labeled_video.py

@@ -7,7 +7,7 @@
 import pandas as pd
 # conda install -c conda-forge pyarrow
 import os
-from neurodsp.smooth import smooth_interpolate_savgol
+from ibldsp.smooth import smooth_interpolate_savgol
 from brainbox.io.one import SessionLoader
 from copy import deepcopy
 

needles2/probe_model.py

@@ -12,7 +12,7 @@
 from iblatlas import atlas
 from neuropixel import TIP_SIZE_UM, trace_header
 from ibllib.pipes.ephys_alignment import EphysAlignment
-from neurodsp.utils import fcn_cosine
+from ibldsp.utils import fcn_cosine
 
 PROV_2_VAL = {
     'Resolved': 90,

viewspikes/gui.py

@@ -7,7 +7,7 @@
 
 from iblutil.numerical import bincount2D
 from viewephys.gui import viewephys
-import neurodsp
+import ibldsp
 from brainbox.io.one import EphysSessionLoader, SpikeSortingLoader
 from iblatlas.atlas import BrainRegions
 
@@ -134,7 +134,7 @@ def show_ephys(self, t0, tlen=1):
 
         sos = scipy.signal.butter(**butter_kwargs, output='sos')
         butt = scipy.signal.sosfiltfilt(sos, raw)
-        destripe = neurodsp.voltage.destripe(raw, fs=self.sr.fs)
+        destripe = ibldsp.voltage.destripe(raw, fs=self.sr.fs)
 
         self.eqc_raw = viewephys(butt, self.sr.fs, channels=self.channels, br=regions, title='butt', t0=t0, t_scalar=1)
         self.eqc_des = viewephys(destripe, self.sr.fs, channels=self.channels, br=regions, title='destripe', t0=t0, t_scalar=1)