I am huangsh and I am currently a PhD student in University of Turin.

I am interested in developing useful bioinformatics tools and interesting projects with large language model🤖

Natural language interface for scRNA-Seq analysis through MCP.

There are mcp server in scmcphub:

• scanpy-mcp: Natural language interface for scRNA-Seq analysis with scanpy through MCP.
• cellrank-mcp: An MCP server specialized in cell fate analysis and trajectory inference using cellrank
• liana-mcp: A dedicated MCP server for cell-cell communication analysis using liana
• decoupler-mcp: An MCP server focused on pathway and gene set analysis using decoupler-mcp

Gain biological insights using LLM in scRNA-Seq cell cluster

ASTK is a command-line software for comprehensive alternative splicing analysis.