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Fix ref flatten and bbox #31

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Flattening and getting the bounding box of CellReferences and CellArrays is fixed. They needed to support x_reflection.
Also added ability to do things like:
Cell.add(Cell, rotation=90, x_reflection=True, rows=2, cols=3, spacing=(2, 3))
Cell.add() now assumes a CellArray is being added if **kargs contains rows

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