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Scripts to plot coverage across entire genome or around loci of interest
A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.
Estimate SC2 lineage abundances from wastewater samples
A nextflow pipeline for decontamination of short reads, long reads and contigs
SARS-CoV-2 genome reconstruction for Illumina data in Nextflow
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
A DSL for data-driven computational pipelines
🧬 gget enables efficient querying of genomic reference databases
python module to plot beautiful and highly customizable genome browser tracks
Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.
Make customized upset plots: from raw data to plots
Authoring Books and Technical Documents with R Markdown
snipit: summarise snps relative to your reference sequence
SARS-Cov-2 Recombinant Finder for fasta sequences
A library of free open source icons for science illustrations in biology and chemistry
Render markdown on the CLI, with pizzazz! 💅🏻
Supporting information for a study on adaptive nanopore sequencing
Pan-genome inference and genotyping with long noisy or short accurate reads
A collection of modern/faster/saner alternatives to common unix commands.
A high-performance, Pythonic language for bioinformatics
Repository for suggesting new lineages that should be added to the current scheme