GitHub - hiclib/iced: Normalizing Hi-C contact counts efficiently

iced

The python module iced implements the ICE normalization of hic data

Depends on

python >= 2.7 numpy >= 1.16 scipy >= 0.19 sklearn pandas

Name	Name	Last commit message	Last commit date
Latest commit NelleV Merge pull request #123 from NelleV/installation Jan 19, 2024 366ebc2 · Jan 19, 2024 History 312 Commits
.github/workflows	.github/workflows	FIX installation	Jan 19, 2024
doc	doc	MAINT let's try building in html/dev and deploying	Jul 22, 2021
examples	examples	TST testing whether ice script output contains 0	Jul 27, 2021
iced	iced	Adding entry point to ice	Jan 19, 2024
requirements	requirements	Replace sklearn with scikit-learn in default requirements	Jan 8, 2023
.gitignore	.gitignore	Adding utility code for Cancer normalization	Nov 3, 2017
CITATION	CITATION	DOC added citation	Mar 16, 2016
CONTRIBUTORS	CONTRIBUTORS	MAINT adding Nicolas to contributors	Jan 10, 2017
LICENSE	LICENSE	MAINT COPYING -> LICENSE	Mar 21, 2019
MANIFEST.in	MANIFEST.in	FIX installation	Jan 19, 2024
Makefile	Makefile	MAINT running tests on installed version of iced	Jul 21, 2021
README.rst	README.rst	FIX numpy 0.15 causes problems	Jun 10, 2020
appveyor.yml	appveyor.yml	ENH add appveyor	Mar 4, 2016
environment-dev.yml	environment-dev.yml	Add environment-dev.yml	Jan 8, 2023
environment.yml	environment.yml	Update environment.yml	Jan 8, 2023
pyproject.toml	pyproject.toml	FIX numpy 0.15 causes problems	Jun 10, 2020
requirements.txt	requirements.txt	MAINT refactoring gh installation	Jul 22, 2021
setup.py	setup.py	Adding entry point to ice	Jan 19, 2024