Adding bioentity endpoints

[pnavada]

Added New Endpoints for Querying Bioentity Information

Files added/modified:

1. indra_cogex/apps/bioentity/api.py – Contains the newly defined endpoints for querying bioentity information.
2. indra_cogex/apps/queries_web/__init__.py – Created query_ns using flask_restx.Namespace instead of api. Defined query_model from query_ns instead of api.
3. indra_cogex/apps/rest_api.py – Created this file to define the api and added both bioentity_ns and query_ns to it.
4. indra_cogex/apps/wsgi.py – Now imports api from apps/rest_api.py instead of queries_web.__init__.py.

This PR also updates url_for calls in the home.html template, superseding #184.

[kkaris]

I tried out the code quickly locally and what I checked out looked good.

A couple of things:

• The code needs to be rebased on the latest main
• Add description of what this PR does: which files are changes and for what purpose they were changed (i.e., add new endpoints, what they do, etc..)

[kkaris]

Also, make sure that the queries web module isn't affected by this PR by trying out some of the endpoints

[pnavada]

(.venv) navada@Pruthvis-MBP bioentity % git rebase main
Current branch develop is up to date.

Rebasing looks fine to me. The branch seems to be upto date with the latest main changes

[pnavada]

Added the file changes to the PR description

[pnavada]

Added separate models for each biomolecule entity (kinase, phosphatase, and transcription factor) to include distinct examples.

[kkaris]

Rebasing looks fine to me. The branch seems to be up to date with the latest main changes

Did you fetch the latest updates from gyorilab? I think your main branch might be out of sync with gyorilab/main.

[kkaris]

I rebased on the latest main on gyorilab and did some formatting updates. A commit from another PR is tagging along here as well. Rebased on main again after #184 was merged.

[kkaris]

Looks good!