Add optional source/target name for Relation #1699
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name: Tests | |
on: [ push, pull_request ] | |
jobs: | |
tests: | |
name: Tests | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ ubuntu-latest ] | |
python-version: [ "3.8", "3.10" ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Set PyTest options | |
if: github.event_name == 'pull_request' | |
run: | |
echo "PYTEST_ADDOPTS=-m 'not nonpublic'" >> $GITHUB_ENV | |
- name: Check PyTest options | |
run: | |
echo $PYTEST_ADDOPTS | |
- name: Install dependencies | |
run: | | |
pip install "tox<4.0.0" | |
BIOONTOLOGY_VERSION=1.30 | |
echo "bio ontology version: ${BIOONTOLOGY_VERSION}" | |
mkdir -p $HOME/.indra/bio_ontology/$BIOONTOLOGY_VERSION | |
wget -nv https://bigmech.s3.amazonaws.com/travis/bio_ontology/$BIOONTOLOGY_VERSION/mock_ontology.pkl -O $HOME/.indra/bio_ontology/$BIOONTOLOGY_VERSION/bio_ontology.pkl | |
- name: Test with pytest | |
run: | |
tox -e py | |
env: | |
INDRA_NEO4J_URL: ${{ secrets.INDRA_NEO4J_URL }} | |
INDRA_NEO4J_USER: ${{ secrets.INDRA_NEO4J_USER }} | |
INDRA_NEO4J_PASSWORD: ${{ secrets.INDRA_NEO4J_PASSWORD }} |