Fun and Interesting Python Notebooks that use the HRA
- A notebook to compare the HuBMAP Cells API and the HRA API via their Python clients
- Getting HRA ASCT+B Table data
- HRA API Usage
- HRA Hierarchical Tissue Unit Annotation
- HRA UI Jupyter Widgets Usage
- HuBMAP Azimuth Datasets
- Using the HuBMAP Cells API and the HRA API for Spatial Prediction
- Making a layered visualization of cell neighborhoods in the CDE
- Annotate KPMP data azimuth-annotate
- Basic distribution plots from downloaded h5ad files
- Combine and normalize SPP1 gene expression data
- Download Kidney Data Products from HuBMAP
- Download Kidney Datasets from HuBMAP
- Download KPMP Kidney Datasets from CellxGene
- Normalize HuBMAP and KPMP datasets for comparison