Deploying to master from @ geomstats/geomstats@9ae0d92 🚀

geomstats · Oct 8, 2024 · 9213487 · 9213487
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Showing 205 changed files with 392 additions and 362 deletions.
diff --git a/.doctrees/api/geomstats.geometry.doctree b/.doctrees/api/geomstats.geometry.doctree
diff --git a/.doctrees/api/geomstats.numerics.doctree b/.doctrees/api/geomstats.numerics.doctree
diff --git a/.doctrees/api/geomstats.test.doctree b/.doctrees/api/geomstats.test.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/notebooks/00_foundations__introduction_to_geomstats.doctree b/.doctrees/notebooks/00_foundations__introduction_to_geomstats.doctree
diff --git a/.doctrees/notebooks/01_foundations__manifolds.doctree b/.doctrees/notebooks/01_foundations__manifolds.doctree
diff --git a/.doctrees/notebooks/02_foundations__connection_riemannian_metric.doctree b/.doctrees/notebooks/02_foundations__connection_riemannian_metric.doctree
diff --git a/.doctrees/notebooks/11_real_world_applications__cell_shapes_analysis.doctree b/.doctrees/notebooks/11_real_world_applications__cell_shapes_analysis.doctree
diff --git a/...ees/notebooks/12_real_world_applications__emg_sign_classification_in_spd_manifold.doctree b/...ees/notebooks/12_real_world_applications__emg_sign_classification_in_spd_manifold.doctree
diff --git a/...ks/13_real_world_applications__graph_embedding_and_clustering_in_hyperbolic_space.doctree b/...ks/13_real_world_applications__graph_embedding_and_clustering_in_hyperbolic_space.doctree
diff --git a/.../notebooks/14_real_world_applications__hand_poses_analysis_in_kendall_shape_space.doctree b/.../notebooks/14_real_world_applications__hand_poses_analysis_in_kendall_shape_space.doctree
diff --git a/...oks/15_real_world_applications__optic_nerve_heads_analysis_in_kendall_shape_space.doctree b/...oks/15_real_world_applications__optic_nerve_heads_analysis_in_kendall_shape_space.doctree
diff --git a/.doctrees/notebooks/17_foundations__stratified_spaces.doctree b/.doctrees/notebooks/17_foundations__stratified_spaces.doctree
diff --git a/.doctrees/notebooks/18_real_world_applications__sao_paulo_traffic_optimization.doctree b/.doctrees/notebooks/18_real_world_applications__sao_paulo_traffic_optimization.doctree
diff --git a/_modules/geomstats/algebra_utils.html b/_modules/geomstats/algebra_utils.html
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diff --git a/_modules/geomstats/datasets/prepare_emg_data.html b/_modules/geomstats/datasets/prepare_emg_data.html
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diff --git a/_modules/geomstats/datasets/prepare_graph_data.html b/_modules/geomstats/datasets/prepare_graph_data.html
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diff --git a/_modules/geomstats/datasets/utils.html b/_modules/geomstats/datasets/utils.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/distributions/brownian_motion.html b/_modules/geomstats/distributions/brownian_motion.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/distributions/lognormal.html b/_modules/geomstats/distributions/lognormal.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/errors.html b/_modules/geomstats/errors.html
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diff --git a/_modules/geomstats/exceptions.html b/_modules/geomstats/exceptions.html
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diff --git a/_modules/geomstats/geometry/base.html b/_modules/geomstats/geometry/base.html
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diff --git a/_modules/geomstats/geometry/complex_manifold.html b/_modules/geomstats/geometry/complex_manifold.html
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diff --git a/_modules/geomstats/geometry/complex_matrices.html b/_modules/geomstats/geometry/complex_matrices.html
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diff --git a/_modules/geomstats/geometry/complex_poincare_disk.html b/_modules/geomstats/geometry/complex_poincare_disk.html
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diff --git a/_modules/geomstats/geometry/complex_riemannian_metric.html b/_modules/geomstats/geometry/complex_riemannian_metric.html
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diff --git a/_modules/geomstats/geometry/connection.html b/_modules/geomstats/geometry/connection.html
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diff --git a/_modules/geomstats/geometry/diffeo.html b/_modules/geomstats/geometry/diffeo.html
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diff --git a/_modules/geomstats/geometry/discrete_curves.html b/_modules/geomstats/geometry/discrete_curves.html
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diff --git a/_modules/geomstats/geometry/discrete_surfaces.html b/_modules/geomstats/geometry/discrete_surfaces.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/geometry/euclidean.html b/_modules/geomstats/geometry/euclidean.html
@@ -45,7 +45,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-    <meta name="docbuild:last-update" content="Oct 8, 2024, 6:28:17 PM"/>
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diff --git a/_modules/geomstats/geometry/fiber_bundle.html b/_modules/geomstats/geometry/fiber_bundle.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
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diff --git a/_modules/geomstats/geometry/full_rank_correlation_matrices.html b/_modules/geomstats/geometry/full_rank_correlation_matrices.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
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@@ -1564,6 +1564,9 @@ <h1>Source code for geomstats.geometry.full_rank_correlation_matrices</h1><div c
 
 <span class="sd">    For details, check out [T2024]_&#39;s section 3.5.</span>
 
+<span class="sd">    To ensure convergence, it is better to use a damped Newton method, which</span>
+<span class="sd">    leverages function being standard self-concordant and strictly convex</span>
+<span class="sd">    (check out section 5.1.5 of [N2018]_).</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -1583,11 +1586,12 @@ <h1>Source code for geomstats.geometry.full_rank_correlation_matrices</h1><div c
 <span class="sd">        “Scaling of Symmetric Matrices by Positive Diagonal Congruence.”</span>
 <span class="sd">        Linear and Multilinear Algebra 57, no. 2 (March 1, 2009): 123–40.</span>
 <span class="sd">        https://doi.org/10.1080/03081080600872327.</span>
+<span class="sd">    .. [N2018] Yurii Nesterov. Lectures on Convex Optimization. Springer, 2018.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">root_finder</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">root_finder</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">root_finder</span> <span class="o">=</span> <span class="n">NewtonMethod</span><span class="p">()</span>
+            <span class="n">root_finder</span> <span class="o">=</span> <span class="n">NewtonMethod</span><span class="p">(</span><span class="n">damped</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">root_finder</span> <span class="o">=</span> <span class="n">root_finder</span>
 

diff --git a/_modules/geomstats/geometry/full_rank_matrices.html b/_modules/geomstats/geometry/full_rank_matrices.html
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diff --git a/_modules/geomstats/geometry/functions.html b/_modules/geomstats/geometry/functions.html
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diff --git a/_modules/geomstats/geometry/general_linear.html b/_modules/geomstats/geometry/general_linear.html
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diff --git a/_modules/geomstats/geometry/grassmannian.html b/_modules/geomstats/geometry/grassmannian.html
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diff --git a/_modules/geomstats/geometry/group_action.html b/_modules/geomstats/geometry/group_action.html
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diff --git a/_modules/geomstats/geometry/heisenberg.html b/_modules/geomstats/geometry/heisenberg.html
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diff --git a/_modules/geomstats/geometry/hermitian.html b/_modules/geomstats/geometry/hermitian.html
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diff --git a/_modules/geomstats/geometry/hermitian_matrices.html b/_modules/geomstats/geometry/hermitian_matrices.html
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diff --git a/_modules/geomstats/geometry/hpd_matrices.html b/_modules/geomstats/geometry/hpd_matrices.html
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diff --git a/_modules/geomstats/geometry/hyperbolic.html b/_modules/geomstats/geometry/hyperbolic.html
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diff --git a/_modules/geomstats/geometry/hyperboloid.html b/_modules/geomstats/geometry/hyperboloid.html
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diff --git a/_modules/geomstats/geometry/hypersphere.html b/_modules/geomstats/geometry/hypersphere.html
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diff --git a/_modules/geomstats/geometry/invariant_metric.html b/_modules/geomstats/geometry/invariant_metric.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/geometry/klein_bottle.html b/_modules/geomstats/geometry/klein_bottle.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/geometry/landmarks.html b/_modules/geomstats/geometry/landmarks.html
@@ -45,7 +45,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
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diff --git a/_modules/geomstats/geometry/lie_algebra.html b/_modules/geomstats/geometry/lie_algebra.html
@@ -45,7 +45,7 @@
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diff --git a/_modules/geomstats/geometry/lie_group.html b/_modules/geomstats/geometry/lie_group.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
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diff --git a/_modules/geomstats/geometry/lower_triangular_matrices.html b/_modules/geomstats/geometry/lower_triangular_matrices.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-    <meta name="docbuild:last-update" content="Oct 8, 2024, 6:28:17 PM"/>
+    <meta name="docbuild:last-update" content="Oct 8, 2024, 7:38:21 PM"/>
   </head>
 
 

diff --git a/_modules/geomstats/geometry/manifold.html b/_modules/geomstats/geometry/manifold.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-    <meta name="docbuild:last-update" content="Oct 8, 2024, 6:28:17 PM"/>
+    <meta name="docbuild:last-update" content="Oct 8, 2024, 7:38:21 PM"/>
   </head>
 
 

diff --git a/_modules/geomstats/geometry/matrices.html b/_modules/geomstats/geometry/matrices.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-    <meta name="docbuild:last-update" content="Oct 8, 2024, 6:28:17 PM"/>
+    <meta name="docbuild:last-update" content="Oct 8, 2024, 7:38:21 PM"/>
   </head>
 
 

diff --git a/_modules/geomstats/geometry/minkowski.html b/_modules/geomstats/geometry/minkowski.html
@@ -45,7 +45,7 @@
     <link rel="search" title="Search" href="../../../search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-    <meta name="docbuild:last-update" content="Oct 8, 2024, 6:28:17 PM"/>
+    <meta name="docbuild:last-update" content="Oct 8, 2024, 7:38:21 PM"/>
   </head>