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Make sure all alignment workflows accept sequence (bam/fastq) inputs #935

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chrisamiller opened this issue Aug 26, 2020 · 3 comments
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Make sure all alignment workflows accept sequence (bam/fastq) inputs #935

chrisamiller opened this issue Aug 26, 2020 · 3 comments
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2.0

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@chrisamiller
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chrisamiller commented Aug 26, 2020 •
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Make a list of top-level pipelines that do alignment (germline, somatic, chipseq, rnaseq, bisulfite, etc and verify that they all accept the "sequence" type input. Add it where needed, using existing workflows as a template.
@chrisamiller chrisamiller changed the title Make sure all workflows accept sequence (bam/fastq) inputs if possible Make sure all alignment workflows accept sequence (bam/fastq) inputs Aug 28, 2020
@chrisamiller chrisamiller added this to the 2.0 milestone Aug 28, 2020
@Sam16711 Sam16711 mentioned this issue Nov 12, 2020
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Created issue #967 for the bisulfite sequencing pipeline.

@Sam16711 Sam16711 mentioned this issue Nov 18, 2020
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@Sam16711
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Created issue #969 for umi molecular and umi duplex pipelines.

@Sam16711 Sam16711 mentioned this issue Nov 18, 2020
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Created issue #970 for rnaseq pipelines.

@Sam16711 Sam16711 reopened this Nov 18, 2020
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