GeneSCF-v1.1-p3

2022/07/25: GeneSCF v1.1 changes

KEGG REST API updated from HTTP to HTTPS.

GeneSCF-v1.1-p2

2019/05/19: GeneSCF v1.1 changes

• Due to changes in HTTP's request and response code, GeneSCF has to undergo some minor changes in some of the modules. Downloading updated version solves issues related to database retrieval (prepare_database module).

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2017/07/07: GeneSCF v1.1 changes

• Sorry for the inconvenience. Due to changes in KEGG API (Release 83.0, July 1, 2017), GeneSCF database modules was updated to work with recent database releases.
• Default databases updated to current versions for Human (hsa/goa_human/Hs), KEGG, Gene Ontology (GO) and Reactome on 2017/07/07.

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2017/06/01 [14:15 (CEST)]: Corrected gene id conversion issues (from gene symbols to gene ids) for organisms other than human while performing enrichment analysis with KEGG (not affected for those who used prepare_database module)

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2017/02/09: GeneSCF v1.1 (patch release 2) News - All features are successfully tested on Windows 10 bash (version 1607)

Note: Require installation of 'unzip' utility on windows bash using 'sudo apt-get install unzip'

2017/01/13: GeneSCF v1.1 (patch release 2) Fixes - Release notes

• Due to changes (January 2017 release) in source databases KEGG and Gene Ontology, GeneSCF database modules have to be updated to work with recent database releases.

List of solved issues:

1. Empty output files
2. KEGG not working with GeneSymbols
3. Some organisms from Gene Ontology giving errors or not able to process

GeneSCF-v1.0

deleted