Obsoleted 5 terms; fixes #28468

[raymond91125]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-03/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-03/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

activation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_0097202

Removed

• activation of cysteine-type endopeptidase activity comment "This term should be used to annotate gene products within the context of cellular processes other than apoptotic cell death (e.g., cell cycle arrest). To annotate gene products involved in activation of cysteine-type endopeptidases where the activation results in apoptotic process, please use the more granular term GO:0006919."

• activation of cysteine-type endopeptidase activity label "activation of cysteine-type endopeptidase activity"

• activation of cysteine-type endopeptidase activity definition "Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase."

  • database_cross_reference "PMID:21726810"

  • database_cross_reference "GOC:mtg_apoptosis"

• activation of cysteine-type endopeptidase activity in_subset gocheck_obsoletion_candidate

• activation of cysteine-type endopeptidase activity SubClassOf positive regulation of cysteine-type endopeptidase activity

• activation of cysteine-type endopeptidase activity SubClassOf zymogen activation

Added

• activation of cysteine-type endopeptidase activity label "obsolete activation of cysteine-type endopeptidase activity"

• activation of cysteine-type endopeptidase activity definition "OBSOLETE. Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase."

  • database_cross_reference "PMID:21726810"

  • database_cross_reference "GOC:mtg_apoptosis"

• activation of cysteine-type endopeptidase activity deprecated true

• activation of cysteine-type endopeptidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28468"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• activation of cysteine-type endopeptidase activity comment "This term should be used to annotate gene products within the context of cellular processes other than apoptotic cell death (e.g., cell cycle arrest). To annotate gene products involved in activation of cysteine-type endopeptidases where the activation results in apoptotic process, please use the more granular term GO:0006919.
  The reason for obsoletion is that this term represents regulation of a molecular function"

inhibition of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_0097340

Removed

• inhibition of cysteine-type endopeptidase activity in_subset gocheck_obsoletion_candidate

• inhibition of cysteine-type endopeptidase activity definition "Any process that prevents the activation of an inactive cysteine-type endopeptidase."

  • database_cross_reference "PMID:20383739"

  • database_cross_reference "GOC:mtg_apoptosis"

• inhibition of cysteine-type endopeptidase activity label "inhibition of cysteine-type endopeptidase activity"

• inhibition of cysteine-type endopeptidase activity SubClassOf negative regulation of cysteine-type endopeptidase activity

• inhibition of cysteine-type endopeptidase activity SubClassOf zymogen inhibition

Added

• inhibition of cysteine-type endopeptidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28468"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• inhibition of cysteine-type endopeptidase activity definition "OBSOLETE. Any process that prevents the activation of an inactive cysteine-type endopeptidase."

  • database_cross_reference "PMID:20383739"

  • database_cross_reference "GOC:mtg_apoptosis"

• inhibition of cysteine-type endopeptidase activity comment "The reason for obsoletion is that this term represents regulation of a molecular function."

• inhibition of cysteine-type endopeptidase activity label "obsolete inhibition of cysteine-type endopeptidase activity"

• inhibition of cysteine-type endopeptidase activity deprecated true

negative regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_2000117

Removed

• negative regulation of cysteine-type endopeptidase activity label "negative regulation of cysteine-type endopeptidase activity"

• negative regulation of cysteine-type endopeptidase activity in_subset gocheck_obsoletion_candidate

• negative regulation of cysteine-type endopeptidase activity definition "Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

  • database_cross_reference "GOC:yaf"

• negative regulation of cysteine-type endopeptidase activity EquivalentTo biological regulation and (negatively regulates some cysteine-type endopeptidase activity)

• negative regulation of cysteine-type endopeptidase activity SubClassOf regulation of cysteine-type endopeptidase activity

• negative regulation of cysteine-type endopeptidase activity SubClassOf negative regulation of endopeptidase activity

• negative regulation of cysteine-type endopeptidase activity SubClassOf negatively regulates some cysteine-type endopeptidase activity

Added

• negative regulation of cysteine-type endopeptidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28468"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• negative regulation of cysteine-type endopeptidase activity label "obsolete negative regulation of cysteine-type endopeptidase activity"

• negative regulation of cysteine-type endopeptidase activity definition "OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

  • database_cross_reference "GOC:yaf"

• negative regulation of cysteine-type endopeptidase activity comment "The reason for obsoletion is that this term represents regulation of a molecular function."

• negative regulation of cysteine-type endopeptidase activity deprecated true

obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0006919

Removed

• obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process term replaced by "GO:2001056"

obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c http://purl.obolibrary.org/obo/GO_0008635

Removed

• obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c term replaced by "GO:2001056"

obsolete activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_0097296

Removed

• obsolete activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway term replaced by "GO:2001056"

obsolete inhibition of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_1990001

Removed

• obsolete inhibition of cysteine-type endopeptidase activity involved in apoptotic process term replaced by "GO:2000117"

obsolete negative regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0043154

Removed

• obsolete negative regulation of cysteine-type endopeptidase activity involved in apoptotic process term replaced by "GO:2000117"

obsolete negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_2001268

Removed

• obsolete negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway term replaced by "GO:2000117"

obsolete negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_2001271

Removed

• obsolete negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis term replaced by "GO:2000117"

obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0043280

Removed

• obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process term replaced by "GO:2001056"

obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_2001269

Removed

• obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway term replaced by "GO:2001056"

obsolete positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_2001272

Removed

• obsolete positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis term replaced by "GO:2001056"

obsolete regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0043281

Removed

• obsolete regulation of cysteine-type endopeptidase activity involved in apoptotic process term replaced by "GO:2000116"

obsolete regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_2001267

Removed

• obsolete regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway term replaced by "GO:2000116"

obsolete regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_2001270

Removed

• obsolete regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis term replaced by "GO:2000116"

positive regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_2001056

Removed

• positive regulation of cysteine-type endopeptidase activity in_subset gocheck_obsoletion_candidate

• positive regulation of cysteine-type endopeptidase activity definition "Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

• positive regulation of cysteine-type endopeptidase activity label "positive regulation of cysteine-type endopeptidase activity"

• positive regulation of cysteine-type endopeptidase activity EquivalentTo biological regulation and (positively regulates some cysteine-type endopeptidase activity)

• positive regulation of cysteine-type endopeptidase activity SubClassOf positively regulates some cysteine-type endopeptidase activity

• positive regulation of cysteine-type endopeptidase activity SubClassOf regulation of cysteine-type endopeptidase activity

• positive regulation of cysteine-type endopeptidase activity SubClassOf positive regulation of endopeptidase activity

Added

• positive regulation of cysteine-type endopeptidase activity comment "The reason for obsoletion is that this term represents regulation of a molecular function."

• positive regulation of cysteine-type endopeptidase activity label "obsolete positive regulation of cysteine-type endopeptidase activity"

• positive regulation of cysteine-type endopeptidase activity definition "OBSOLETE. Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

• positive regulation of cysteine-type endopeptidase activity deprecated true

• positive regulation of cysteine-type endopeptidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28468"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_2000116

Removed

• regulation of cysteine-type endopeptidase activity definition "Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

  • database_cross_reference "GOC:yaf"

• regulation of cysteine-type endopeptidase activity in_subset gocheck_obsoletion_candidate

• regulation of cysteine-type endopeptidase activity label "regulation of cysteine-type endopeptidase activity"

• regulation of cysteine-type endopeptidase activity EquivalentTo biological regulation and (regulates some cysteine-type endopeptidase activity)

• regulation of cysteine-type endopeptidase activity SubClassOf regulates some cysteine-type endopeptidase activity

• regulation of cysteine-type endopeptidase activity SubClassOf regulation of endopeptidase activity

Added

• regulation of cysteine-type endopeptidase activity label "obsolete regulation of cysteine-type endopeptidase activity"

• regulation of cysteine-type endopeptidase activity definition "OBSOLETE. Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity."

  • database_cross_reference "GOC:obol"

  • database_cross_reference "GOC:yaf"

• regulation of cysteine-type endopeptidase activity deprecated true

• regulation of cysteine-type endopeptidase activity comment "The reason for obsoletion is that this term represents regulation of a molecular function."

• regulation of cysteine-type endopeptidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28468"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)