closes #29281; closes #29246; closes #29160; closes #29144; closes #2…

[ValWood]

…9131; closes #29130

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-02/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-02/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

Mrh5C translation activator complex http://purl.obolibrary.org/obo/GO_0180049

Added

• Mrh5C translation activator complex id "GO:0180049"

• Mrh5C translation activator complex definition "A protein complex capable of translation activator activity, and is involved in the activation of cox1 mRNA for translation. In fission yeast this complex consists of a scaffold (Sls1), a helicase (Mrh5), and PPR repeat proteins Prr4 and Mtf2."

  • database_cross_reference "PMID:38499152"

• Mrh5C translation activator complex term tracker item "https://github.com/geneontology/go-ontology/issues/29144"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• Mrh5C translation activator complex has_obo_namespace "cellular_component"

• Mrh5C translation activator complex creation_date "2024-12-02T13:17:12Z"

• Mrh5C translation activator complex label "Mrh5C translation activator complex"

• Mrh5C translation activator complex created_by "vw"

• Mrh5C translation activator complex has_exact_synonym "Mrh5C complex"

• Class: Mrh5C translation activator complex

• Mrh5C translation activator complex SubClassOf protein-containing complex

globoside biosynthetic process http://purl.obolibrary.org/obo/GO_0001576

Removed

• globoside biosynthetic process definition "The chemical reactions and pathways resulting in the formation of a ceramide with a core structure of GalNAc-beta-(1->3)-Gal-alpha-(1->4)-Glc(I)."
  • database_cross_reference "ISBN:0198506732"

Added

• globoside biosynthetic process definition "The chemical reactions and pathways resulting in the formation of a glycosphingolipid with a core structure of GalNAc-beta-(1->3)-Gal-alpha-(1->4)-Glc(I)."

  • database_cross_reference "ISBN:0198506732"

• globoside biosynthetic process term tracker item "https://github.com/geneontology/go-ontology/issues/29130"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

late endosome to vacuole transport http://purl.obolibrary.org/obo/GO_0045324

Added

• late endosome to vacuole transport term tracker item "https://github.com/geneontology/go-ontology/issues/29318"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• late endosome to vacuole transport SubClassOf vacuolar transport

late endosome to vacuole transport via multivesicular body sorting pathway http://purl.obolibrary.org/obo/GO_0032511

Removed

• late endosome to vacuole transport via multivesicular body sorting pathway SubClassOf vacuolar transport

mitochondrial degradosome http://purl.obolibrary.org/obo/GO_0045025

Removed

• mitochondrial degradosome SubClassOf cytoplasmic exosome (RNase complex)

Added

• mitochondrial degradosome term tracker item "https://github.com/geneontology/go-ontology/issues/29281"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• mitochondrial degradosome SubClassOf exoribonuclease complex

nuclear mRNA surveillance of meiosis-specific transcripts http://purl.obolibrary.org/obo/GO_0033621

Removed

• nuclear mRNA surveillance of meiosis-specific transcripts label "nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts"

Added

• nuclear mRNA surveillance of meiosis-specific transcripts term tracker item "https://github.com/geneontology/go-ontology/issues/29246"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• nuclear mRNA surveillance of meiosis-specific transcripts has_exact_synonym "nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts"

• nuclear mRNA surveillance of meiosis-specific transcripts label "nuclear mRNA surveillance of meiosis-specific transcripts"

protein-mitochondrial outer membrane tethering activity http://purl.obolibrary.org/obo/GO_0180050

Added

• protein-mitochondrial outer membrane tethering activity id "GO:0180050"

• protein-mitochondrial outer membrane tethering activity definition "The binding activity of a molecule that brings together a protein or protein complex and a mitochondrial outer membrane lipid or membrane-associated protein, in order to maintain the localization of the protein, or protein complex at a specific mitochondrial outer membrane location."

  • database_cross_reference "GOC:vw"

• protein-mitochondrial outer membrane tethering activity label "protein-mitochondrial outer membrane tethering activity"

• protein-mitochondrial outer membrane tethering activity creation_date "2024-12-02T13:24:07Z"

• protein-mitochondrial outer membrane tethering activity has_obo_namespace "molecular_function"

• protein-mitochondrial outer membrane tethering activity created_by "vw"

• protein-mitochondrial outer membrane tethering activity term tracker item "https://github.com/geneontology/go-ontology/issues/29131"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• Class: protein-mitochondrial outer membrane tethering activity

• protein-mitochondrial outer membrane tethering activity SubClassOf protein-membrane adaptor activity

subtelomeric heterochromatin formation http://purl.obolibrary.org/obo/GO_0031509

Removed

• subtelomeric heterochromatin formation SubClassOf part_of some telomere organization

Added

• subtelomeric heterochromatin formation term tracker item "https://github.com/geneontology/go-ontology/issues/29160"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)