closes #29060; closes #29053; closes #28538; closes #24046

[ValWood]

No description provided.

[pgaudet]

Looks like you deleted the definition of GO:1903562 when you obsoleted.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-10-28/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-10-28/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process http://purl.obolibrary.org/obo/GO_1902634

Removed

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process comment "Phosphatidylinositol-4,5-bisphosphate, PtdIns(4,5)P(2) common name."

Added

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process has_exact_synonym "phosphatidylinositol-4,5-bisphosphate catabolic process"

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process has_exact_synonym "PtdIns(4,5)P(2) catabolic process"

1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process http://purl.obolibrary.org/obo/GO_1902633

Removed

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process comment "Phosphatidylinositol-4,5-bisphosphate, PtdIns(4,5)P(2) common name."

Added

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process has_exact_synonym "phosphatidylinositol-4,5-bisphosphate metabolic process"

• 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process has_exact_synonym "PtdIns(4,5)P(2) metabolic process"

ABC-type sterol transporter activity http://purl.obolibrary.org/obo/GO_0034041

Removed

• ABC-type sterol transporter activity definition "Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sterol(in) = ADP + phosphate + sterol(out)."

  • database_cross_reference "GOC:rl"

  • database_cross_reference "GOC:BHF"

Added

• ABC-type sterol transporter activity term tracker item "https://github.com/geneontology/go-ontology/issues/27884"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• ABC-type sterol transporter activity definition "Enables the transfer of a sterol from one side of a membrane to the other according to the reaction: ATP + H2O + sterol(in) = ADP + phosphate + sterol(out)."

  • database_cross_reference "GOC:rl"

  • database_cross_reference "GOC:BHF"

kinetochore-microtubule adaptor activity http://purl.obolibrary.org/obo/GO_0180049

Added

• kinetochore-microtubule adaptor activity definition "The binding activity of a protein that connects the kinetochore and the spindle microtubules as part of attachment of mitotic spindle microtubules to kinetochore."

  • database_cross_reference "PMID:22521786"

• kinetochore-microtubule adaptor activity id "GO:0180049"

• kinetochore-microtubule adaptor activity created_by "vw"

• kinetochore-microtubule adaptor activity has_obo_namespace "molecular_function"

• kinetochore-microtubule adaptor activity creation_date "2024-10-25T15:03:12Z"

• kinetochore-microtubule adaptor activity label "kinetochore-microtubule adaptor activity"

• kinetochore-microtubule adaptor activity term tracker item "https://github.com/geneontology/go-ontology/issues/29060"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• Class: kinetochore-microtubule adaptor activity

• kinetochore-microtubule adaptor activity SubClassOf kinetochore adaptor activity

obsolete N-terminal protein amino acid N-linked glycosylation http://purl.obolibrary.org/obo/GO_0035629

Removed

• obsolete N-terminal protein amino acid N-linked glycosylation term replaced by "GO:0006487"

Added

• obsolete N-terminal protein amino acid N-linked glycosylation consider "GO:0006487"

obsolete microtubule bundle formation involved in mitotic spindle midzone assembly http://purl.obolibrary.org/obo/GO_1903562

Removed

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundling involved in spindle midzone biogenesis involved in mitosis"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly label "microtubule bundle formation involved in mitotic spindle midzone assembly"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundling involved in spindle midzone assembly involved in mitosis"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundling involved in mitotic spindle midzone formation"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundle formation involved in mitotic spindle midzone formation"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly definition "Any microtubule bundle formation that is involved in spindle midzone assembly involved in mitosis."

  • database_cross_reference "PMID:15647375"

  • database_cross_reference "GO_REF:0000060"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_related_synonym "microtubule bundling involved in mitotic spindle midzone assembly"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundle formation involved in spindle midzone assembly involved in mitosis"

  • database_cross_reference "GOC:dos"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly has_exact_synonym "microtubule bundling involved in spindle midzone formation involved in mitosis"

  • database_cross_reference "GOC:TermGenie"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly EquivalentTo microtubule bundle formation and (part_of some mitotic spindle midzone assembly)

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly SubClassOf part_of some mitotic spindle midzone assembly

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly SubClassOf microtubule bundle formation

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly SubClassOf microtubule cytoskeleton organization involved in mitosis

Added

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly term tracker item "https://github.com/geneontology/go-ontology/issues/24046"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly comment "This term was obsoleted because it represents a GO-CAM model (couples MF and BP)"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly definition "OBSOLETE. Any microtubule bundle formation that is involved in spindle midzone assembly involved in mitosis."

  • database_cross_reference "GOC:vw"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly label "obsolete microtubule bundle formation involved in mitotic spindle midzone assembly"

• obsolete microtubule bundle formation involved in mitotic spindle midzone assembly deprecated true

[ValWood]

I added the definition back.
I added myself as the reference, because I wasn't sure what that was (since I originally requested by Term Genie)
I just can't see the problem though???