Obsoleted multiple terms under TCA cycle enzyme complex, #26882.

src/ontology/go-edit.obo

@@ -56644,12 +56644,13 @@ relationship: part_of GO:0005737 ! cytoplasm
 
 [Term]
 id: GO:0005962
-name: mitochondrial isocitrate dehydrogenase complex (NAD+)
+name: obsolete mitochondrial isocitrate dehydrogenase complex (NAD+)
 namespace: cellular_component
-def: "Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
-comment: Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'isocitrate dehydrogenase (NAD+) activity ; GO:0004449'.
-intersection_of: GO:0045242 ! isocitrate dehydrogenase complex (NAD+)
-intersection_of: part_of GO:0005739 ! mitochondrion
+def: "OBSOLETE. Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045242
 
 [Term]
 id: GO:0005963
@@ -156407,13 +156408,14 @@ relationship: part_of GO:0031966 ! mitochondrial membrane
 
 [Term]
 id: GO:0030062
-name: mitochondrial tricarboxylic acid cycle enzyme complex
+name: obsolete mitochondrial tricarboxylic acid cycle enzyme complex
 namespace: cellular_component
-def: "Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
 synonym: "TCA cycle enzyme complex" BROAD []
-intersection_of: GO:0045239 ! tricarboxylic acid cycle enzyme complex
-intersection_of: part_of GO:0005739 ! mitochondrion
-relationship: part_of GO:0005759 ! mitochondrial matrix
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045239
 
 [Term]
 id: GO:0030063
@@ -262763,13 +262765,14 @@ intersection_of: capable_of GO:0004449 ! isocitrate dehydrogenase (NAD+) activit
 
 [Term]
 id: GO:0045243
-name: cytosolic isocitrate dehydrogenase complex (NAD+)
+name: obsolete cytosolic isocitrate dehydrogenase complex (NAD+)
 namespace: cellular_component
-def: "Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
 synonym: "isocitrate dehydrogenase complex (NAD+)" BROAD []
-is_a: GO:0045246 ! cytosolic tricarboxylic acid cycle enzyme complex
-intersection_of: GO:0045242 ! isocitrate dehydrogenase complex (NAD+)
-intersection_of: part_of GO:0005829 ! cytosol
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045242
 
 [Term]
 id: GO:0045244
@@ -262779,21 +262782,20 @@ alt_id: GO:0008325
 alt_id: GO:0045245
 def: "A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming GTP." [GOC:jl, PMID:27487822]
 synonym: "succinyl-CoA synthetase, GDP-forming" EXACT [CORUM:392]
-is_a: GO:0030062 ! mitochondrial tricarboxylic acid cycle enzyme complex
-is_a: GO:0042709 ! succinate-CoA ligase complex
-intersection_of: GO:0030062 ! mitochondrial tricarboxylic acid cycle enzyme complex
+intersection_of: GO:0032991 ! protein-containing complex
 intersection_of: capable_of GO:0004776 ! succinate-CoA ligase (GDP-forming) activity
-intersection_of: part_of GO:0005739 ! mitochondrion
 
 [Term]
 id: GO:0045246
-name: cytosolic tricarboxylic acid cycle enzyme complex
+name: obsolete cytosolic tricarboxylic acid cycle enzyme complex
 namespace: cellular_component
-def: "Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
 synonym: "TCA cycle enzyme complex" BROAD []
 synonym: "tricarboxylic acid cycle enzyme complex" BROAD []
-is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
-relationship: part_of GO:0005829 ! cytosol
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045239
 
 [Term]
 id: GO:0045247
@@ -262855,6 +262857,7 @@ synonym: "alpha-ketoglutarate dehydrogenase complex" EXACT []
 synonym: "dihydrolipoamide S-succinyltransferase complex" EXACT []
 synonym: "KGDHC" EXACT []
 xref: Wikipedia:Oxoglutarate_dehydrogenase_complex
+is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
 is_a: GO:0045240 ! alpha-ketoacid dehydrogenase complex
 intersection_of: GO:0032991 ! protein-containing complex
 intersection_of: capable_of GO:0034602 ! oxoglutarate dehydrogenase (NAD+) activity
@@ -262893,6 +262896,7 @@ id: GO:0045257
 name: succinate dehydrogenase complex (ubiquinone)
 namespace: cellular_component
 def: "The enzyme that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration." [GOC:kd, ISBN:0198547684]
+is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
 is_a: GO:0045281 ! succinate dehydrogenase complex
 intersection_of: GO:0045281 ! succinate dehydrogenase complex
 intersection_of: capable_of GO:0008177 ! succinate dehydrogenase (quinone) activity