Obsoletion request: GO:0071076 RNA 3' uridylation #6217
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name: Create new pull request | |
on: | |
workflow_dispatch: | |
issues: | |
types: [ opened, edited ] | |
jobs: | |
check: | |
runs-on: ubuntu-latest | |
outputs: | |
phraseExists: ${{ steps.check-body.outputs.result }} | |
steps: | |
- name: Check if issue body contains 'Hey ontobot' | |
id: check-body | |
uses: actions/github-script@v6 | |
with: | |
script: | | |
const issue = await github.rest.issues.get({ | |
owner: context.repo.owner, | |
repo: context.repo.repo, | |
issue_number: context.issue.number | |
}); | |
if (!issue.data.body) { | |
console.log('Issue body is empty or null'); | |
return false; | |
} | |
return issue.data.body.toLowerCase().includes('hey ontobot'); | |
build: | |
needs: check | |
if: needs.check.outputs.phraseExists == 'true' | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ["3.9"] | |
os: [ ubuntu-latest ] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Return issue number | |
id: gh-script-issue | |
uses: actions/github-script@v6 | |
with: | |
# github-token: ${{ secrets.GH_TOKEN }} | |
script: | | |
const issue_number = context.issue.number | |
const repo = context.repo.owner+"/"+context.repo.repo | |
return issue_number | |
- name: Return repository name | |
id: gh-script-repo | |
uses: actions/github-script@v6 | |
with: | |
# github-token: ${{ secrets.GH_TOKEN }} | |
script: | | |
const repo = context.repo.owner+"/"+context.repo.repo | |
return repo | |
- name: Set branch name | |
id: vars | |
run: | | |
echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV | |
echo "resource=src/ontology/go-edit.obo" >> $GITHUB_ENV | |
- name: Install dependencies | |
run: | | |
pip install ontobot-change-agent | |
- name: Run ochange | |
id: ochange | |
run: | | |
ochange process-issue ${{ env.resource }} \ | |
-r ${{ steps.gh-script-repo.outputs.result }} \ | |
-n ${{ steps.gh-script-issue.outputs.result }} \ | |
-g ${{ secrets.GH_TOKEN }} \ | |
-p GO | |
- name: Create Pull Request | |
uses: peter-evans/create-pull-request@v4 | |
if: ${{ env.PR_TITLE}} | |
with: | |
branch-suffix: short-commit-hash | |
labels: Automated | |
body: ${{ env.PR_BODY }} | |
title: ${{ env.PR_TITLE }} | |
author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com> | |
base: ${{ github.head_ref }} | |
branch: ${{ env.branch-name }} | |
token: ${{ secrets.PR_ACTION_TOKEN }} |