v2.1.0

Highlights

Environment variables are now properly compatible with Galaxy's job conf and support both lists and dicts (#79):

 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/.*:
   gpus: 1
   env:
     - name: MY_ADDITIONAL_FLAG
       value: "arthur"
     - file: /galaxy/tools/hisat2.env
 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy7:
   inherits: toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/.*:
   env:
     MY_ADDITIONAL_FLAG: "zaphod"

What's Changed

• Automatically convert envs to string, but make sure params are preserved by @nuwang in #73
• Fix indentation by @bernt-matthias in #76
• Convert env to a list compatible with Galaxy job conf by @natefoo in #79
• Fix missing app.config.is_set() in mock config for dry-run by @natefoo in #80
• Refactor and fix dryrun by @nuwang in #82
• Add initializer to handle empty sequence when reducing by @nuwang in #84

New Contributors

• @bernt-matthias made their first contribution in #76

Full Changelog: v2.0.1...v2.1.0