Merge pull request #561 from calbach/improper-placement

Invert the semantics for properPlacement to improperPlacement
ga4gh · Mar 2, 2016 · 0d50597 · 0d50597
2 parents bf36f08 + bc94beb
commit 0d50597
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/main/resources/avro/reads.avdl b/src/main/resources/avro/reads.avdl
@@ -183,9 +183,9 @@ record ReadAlignment {
 
   /**
   The orientation and the distance between reads from the fragment are
-  consistent with the sequencing protocol (equivalent to SAM flag 0x2)
+  inconsistent with the sequencing protocol (inverse of SAM flag 0x2)
   */
-  union { null, boolean } properPlacement = null;
+  union { null, boolean } improperPlacement = null;
 
   /** The fragment is a PCR or optical duplicate (SAM flag 0x400). */
   union { null, boolean } duplicateFragment = null;